Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0663 ATGATGGATGGGAGGCGGCATTCTGTTGATATTCCTATTTCGAAGACTCTTGTAGCGTTGAGGAGAGTCAGGTCATTGAGGGATCCATCTACGAATTCTATGAGCAAACTCTGTTCTTCGATTGATAATTTACATTGGGAAAACAGTTCAGGCAATGGGATTTCTCTGCGGTTCTTGGATGCTTCTCGTGCTTGTGATTCTGATGATAATGGTGCTTCAAGATCAAAGAATTTAAGTCATAAGCTGCACAGAGAGCTCGATGCTGCTGATTTTGAATTGAACTGTGGCCTTTTCAACACTAAACTTAAGTCTTGTCTCGAAGGGCAGCAGGATGAAGAACTCGTTTACTCTGATATGAATCAGGAAGGCAATTCTGGTAATAAGTCGCCTAGTGAAAGCTGTTATAGCAACCATGGAGGTAAGGAATTAGATTTAGCATGCATTATGCCTCCTAGTAATGAGGCAACTTCTGGATCATCAAAATTAGGGAGAATTGATCATTCTAAGTTAAGTAGAAAAACTCTAAGCAAGAGTCAAGTAAAACCACCTGAAGTAGTGGGTGATATTGCAAGTCTTAGAGGTAGTCCATGCCTTTCGGCTGGTGAAGCTCTCTCAGCCTACAGTTCATCAACGAATATATATCAAGATGTTGATGTTGTTGATAATAATCACCATGGATGTGGAATAAGCTGTTGTTGGACGAAATCACCAAGGTTTAGAGAATCAAATCTTTATTCTGATATAGAAGACCGTCCTTTGATATCTTGGCACACTGATGAGACAGCTCTTTATGGACATAAAAGCATAAGACACATTGGTGGTGAAATCAGTCCAAATTTGGAAACTCCTAGAAGTTTAAGTATGAAATTCAGGCCAAAATCTTTTAATGATTTGGTTGGACAAAATGTGGTATCGAGGTCTCTTTTGGGTGCCATCTCTAAGGGAAGGATAGCCTCTTTCTATATCTTCCATGGTCCCCGTGGTACAGGCAAGACCTCTGCATCTAGGATTTTTGCTGCGGCTCTGAATTGTCTCTCCCTTGAGGAGGAAAGACCCTGTGGTCTGTGCAGAGAATGTGTTTTATTCTTTTCTGGAAGAAGTAAAGATGCTAAAGAAGTGGATTCTGTGAGAATCAATCGTATGGACAAAGTAAAATCCCTTGTTAAGAATGCATGCACCCCTCCAGTTTCTTCACGTTTTAAGGTTTTTATTGTTGATGAGTGCCAGTTGATACATGGAGAAACATGGGCGAGTCTTTTGAATAGCCTAGAGAACCTTTCTCAACATGTGGTTTTTGTGATGATAACTCCGGATTTAGATAAGCTTCCCCGAAGTGCAGTTTCCCGGGCCCAGAGGTATCACTTTCCAAAGATAAAAGATGCTGACATTGCAAGCAGATTGGAGAAAATTTGTGTCAAAGAAGGTCTTGAATTTGAACAGGTTGCTTTGCGCTTCATTGCTGCTAAATCCTGTGGTTCACTTAGGGATGCAGAAATTATGCTTGATCAACTGAGCTTGCTTGGTAAAAAAATCACAATTTCCTTAGCCTATGAGCTTACTGGGATCGTTTCTGATGATGAATTGCTTGAATTGCTGGATCTAGCCTTGTCATCTGACACTTCAAATACAGTTATAAGAGCCCGAGAGCTAATGAGATCAAGGGTGGATCCTATGCACCTTATATCACAGCTGGCAAATCTTATTATGGACATTCTTGCAGGGAAATGTGATGATGGTGGTTCTGAAGTCAGAAGGAGGTTTTCTAGTAGACATAACTCTGAAGCAGACCTTCAGAAACTAAATCATGCGTTAAGAATACTCTCTGAAACGGAGAAGCAATTACGAATTTCAAAGAATCAGACAACATGGTTCACAGTAGCTCTTCTACAGTTAAGCTCTGCAGAACATTCTTCTGTTGAAGCAAATGATACCAAATTGAGAGATGGATGCAAAGGAGATGGCGATTTCTGCAGTACATCATCTACAGGGGATAGCATGAAGCATCTTGCCTCTGGTCAGTGTGATGAAAAGTTATATAGATTAGGTGTGCAGCAAGATCACAAAGGAACATTAAGTTCCATATGGTATAAAGCCACAGAGTTATGTCAATCTAACAGGCTCAAGACTTTTCTCAGGAAACAGGGGAAGTTGTCTTCGCTTTGTGTTAATCATGGTCTTGCAATTGCTGAGTTGGAGTTCCACCATCGTCACTACATATGTAGGGCTGAGAAGTCATGGAAATTGATTGCTAGTTCTCTGCAACTCATATTGGGTTGCAACATTGAGCTCAGGATCAATCATGTACCTTGTACTTCTGAATCTAAGTATGCCAAATTGAAGAGGTCGTCTTTCAGCTTTTTTAGTTGTTCCCGCAGAATTCATCGAAGATCACTCTCGTCTGATGAACAAGGAAGTGAACCTATCTATACTTACATGTCTCAAAAACCCATGATGAAGGATAGAACTCTGACTTGTACCTCTGATTGTGGATCTCAGATGCAACAACCTGAGTCCAACCATGGAATGGAGGTTGTAACTGCATTGAGAGATAGTGAAGGAAATTTGCTAAGCTCAAAGAAAAGCTTGTTGAATGGATCATGTCAAGATACTTCGAGGACCTCAAGTTCTGGGGTTGATTCCTCTAAGGAAGAGGGACATGATTATGCGCGTCTAGTTTCATCAAACCCTGACTCAGACTATCAGTCAAAATGTATTCCTCGGATTCTATGGATTCGTAAGAAGAAATTACGATCTCCAGATCTATCCCAGTTGATTTTCCAGGGTACCCAACAACAGAAAGATTTTGTTTTGTCTATACCAAATTGCACCTATTCTGAGACATGTAGCTATACCAGCGAACCTTGTGTTTTCTCCAGCAGCTTTAACAACTGCACCAAACCCACCCAAAATGAGAAAAGTCCTAAGTTGGATTCAGATTTGCTTTGTTGGAGAACCCCCTCATCTTCCTTGAGGAAGGTAGGCTTGCTAAAACATTATGCAGCTCCTTGGAAATCGGTCCTTGTTATCTGTATTGGCATGAAGCTTCCCCTTAAAGATGAGTCTCCTGGAAGTGGAATCCATGCATTAACAATCAAAAGCCACCATAATTTGATTGTGGGATTGCTTTAA 3129 0.4078 MMDGRRHSVDIPISKTLVALRRVRSLRDPSTNSMSKLCSSIDNLHWENSSGNGISLRFLDASRACDSDDNGASRSKNLSHKLHRELDAADFELNCGLFNTKLKSCLEGQQDEELVYSDMNQEGNSGNKSPSESCYSNHGGKELDLACIMPPSNEATSGSSKLGRIDHSKLSRKTLSKSQVKPPEVVGDIASLRGSPCLSAGEALSAYSSSTNIYQDVDVVDNNHHGCGISCCWTKSPRFRESNLYSDIEDRPLISWHTDETALYGHKSIRHIGGEISPNLETPRSLSMKFRPKSFNDLVGQNVVSRSLLGAISKGRIASFYIFHGPRGTGKTSASRIFAAALNCLSLEEERPCGLCRECVLFFSGRSKDAKEVDSVRINRMDKVKSLVKNACTPPVSSRFKVFIVDECQLIHGETWASLLNSLENLSQHVVFVMITPDLDKLPRSAVSRAQRYHFPKIKDADIASRLEKICVKEGLEFEQVALRFIAAKSCGSLRDAEIMLDQLSLLGKKITISLAYELTGIVSDDELLELLDLALSSDTSNTVIRARELMRSRVDPMHLISQLANLIMDILAGKCDDGGSEVRRRFSSRHNSEADLQKLNHALRILSETEKQLRISKNQTTWFTVALLQLSSAEHSSVEANDTKLRDGCKGDGDFCSTSSTGDSMKHLASGQCDEKLYRLGVQQDHKGTLSSIWYKATELCQSNRLKTFLRKQGKLSSLCVNHGLAIAELEFHHRHYICRAEKSWKLIASSLQLILGCNIELRINHVPCTSESKYAKLKRSSFSFFSCSRRIHRRSLSSDEQGSEPIYTYMSQKPMMKDRTLTCTSDCGSQMQQPESNHGMEVVTALRDSEGNLLSSKKSLLNGSCQDTSRTSSSGVDSSKEEGHDYARLVSSNPDSDYQSKCIPRILWIRKKKLRSPDLSQLIFQGTQQQKDFVLSIPNCTYSETCSYTSEPCVFSSSFNNCTKPTQNEKSPKLDSDLLCWRTPSSSLRKVGLLKHYAAPWKSVLVICIGMKLPLKDESPGSGIHALTIKSHHNLIVGLL 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0663 1042 CDD HLD_clamp_pol_III_gamma_tau 458 521 IPR045085 -
Dere03g0663 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 507 IPR027417 -
Dere03g0663 1042 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 286 698 - -
Dere03g0663 1042 NCBIfam DNA polymerase III subunit gamma/tau 285 631 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Dere03g0663 1042 Gene3D - 279 456 IPR027417 -
Dere03g0663 1042 FunFam DNA polymerase III subunit gamma/tau 459 521 - -
Dere03g0663 1042 Gene3D - 459 521 - -
Dere03g0663 1042 SUPERFAMILY post-AAA+ oligomerization domain-like 522 633 IPR008921 GO:0003677|GO:0006260
Dere03g0663 1042 MobiDBLite consensus disorder prediction 859 878 - -
Dere03g0663 1042 FunFam Protein STICHEL-like 1 isoform C 522 635 - -
Dere03g0663 1042 Pfam DNA polymerase III, delta subunit 301 458 - -
Dere03g0663 1042 Gene3D - 522 634 - -
Dere03g0663 1042 MobiDBLite consensus disorder prediction 859 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0663 Dere-ChrDere03 10810434 10815245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0663 276 573 Core DNA Replication Machinery Family AT1G21690 24.172 6.76e-13 69.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0663 03 10810434 10815245 Dere03g0663 03 10810434 10815245 ECH