Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0655 ATGGCGGGTTCGGCAGCTCTGGCATCAGAGCCAAACGCGGAGGTGTTTTCATGGCTAAAATCTCTTCCTCTGGCTCCAGAGTACCGGCCTACTCTGGCTGAGTTCCAGGATCCGATTTCGTACATTTTTAAGATCGAGAAGGAAGCTTCCAAGTATGGAATCTGCAAAATTGTTCCCCCCGTGCCTCCTTCTTCCAAGAAGACAGCAATTGCGAATCTTAATCGCTCGTTGGCAGCACGAGCTGCTTCTTCTGACTCTTCTAATTCGAAATCTCAGCCTACATTCACCACAAGGCAGCAGCAGATCGGGTTCTGCCCTCGGAAGCCAAGGCCCGTGCAGCGTCCTGTGTGGCAGAGTGGGGAATACTACACGTTTCAGGAATTTGAAGCGAAGGCCAAGGCTTTTGAGAAGAATTATCTCAAAAAATGTGCTAAGAAAGGTGGGCTCTCGCCTCTGGAGATAGAAACGCTTTATTGGAAGGCGACAGTGGACAAACCCTTTTCGGTTGAGTACGCAAATGATATGCCTGGTTCGGCTTTCGTTCCCGTGAATGGAAAAAAATGTAGAGAGGCAGGGGAGGGTGTGACTCTTGGTGAGACTGCATGGAACATGAGGGGGGTTTCACGGGCAAATGGCTCTTTGTTGAGGTTTATGAAGGAGGAGATTCCAGGTGTTACGTCACCGATGGTGTATGTAGCTATGTTGTTTAGCTGGTTTGCTTGGCATGCAGAGGATCATGACTTGCATAGCTTGAATTACCTCCATATGGGGGCAGGCAAGACTTGGTATGGCGTGCCGCGGGATGCAGCGGTCGCATTCGAGGAAGTTGTCAGAGTTCATGGGTATGGAGGAGAAATAAACCCTCTTGTTACTTTTGCTATACTTGGTGAGAAAACCACTGTGATGTCACCTGAAGTATTTATCAGCGCAGGGGTTCCTTGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTGACATTTCCAAGAGCCTATCACACTGGGTTTAGTCATGGATTTAATTGTGGGGAGGCAGCTAACATTGCAACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTCGAAGGGCTTCAATAAATTACCCTCCCATGGTTTCACATTTCCAGTTACTTTATGATCTTGCGCTATCTTTGTGTTCAAGAACTCCTGGGGATATCAGTGCAGAACCACGGAGTTCTCGACTTAGAGACAAGAGGAAGAGTGAAGGGGAAACTGTAATTAAAGAGTTGTTTGTCCAGGATGTGTTACAGAACAATGATCTGCTTCATGGACTTGGGAGAGGATCTGCTATAGTACTTCTTCCTCGTAGCTCTTCAGATATTTCTGTTTGCTCAAAATTACGTGTTGGTTCCCAACAACTGACAGTGAACCCTGGGTATTCTCCCAATGCATGCAATTCCGAGGGAATGAATTCTTCAAAAGGTTTTGTTTCTGATGACCTGGTTTTCAGCAGGAATCATGGAATCAAGCAATTAAAAGGTTTCTATTCAGTAAAAGAGAAGTTTGCTTCATTGTGTGAAAGGAACAGGGTATCCTCATCAAGGGTAAATGATAACCTATGCTCTTCAAGTTCTAAGCCACTTGAAAGCAACACTGAAAGAGAGACAAGTCAGGGTGATGGGTTGTCAGATCAGAGACTATTTTCATGTGTCACTTGCGGTATATTAAGCTTTGCTTGTGTTGCTATTGTACAGCCAAGGGAACCAGCAGCTAGATACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGGTCGTTGGTTCGGGAGTGAGTATCAATAAGTTTGCTACTGCCCATGGAGATGCAACTATTTCTGAGAAAGAGACATTTACAGGATGGAAGGTAAAGAACACCCCAGATATTTTGTATGATAATCCAGTTCAATCTGTGGAATACCAGAGACAGACTGAAGATCAATCACATGAGGAGGCTTTGCGTATTAAGAGACAAAAAGATACTTCAGCACTTAGCTTATTGGCATCTGCATATGGAAATTCATCTGATTCAGAGGAAGATCAGGTTGACTCATATATTGCAGTTGATGATCATGAATCAAATGTAATAGACCGTCCATCAGGAAGCATATCTCAGAAGATGTCTTGTTTGGCTTCTCATTGTCAAGATTGCAATGCAAGTGAAGTTGGGGTCCATGATGATTATACACAAAGGGCTGAGTCAGAAGCTTGTGGTACTACTTCAGGGACTGCATTTAAAAATACAAGTTGTACCCTAAATTATGCTCAAGATAGAATTCCATTGTTGCCACATTCTGATGAAGACTCGTCTAGATTGCATGTCTTCTGTCTAGAGCATGCTGCAGAGGTGGAGCAGCAACTTCGCCCAATAGGAGGAGCACACATATTGCTTTTATGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCGAAGTTTGTGGCAGAAGCACTGGGTATTGATTATATATGGAAGAACCTTGCATACAGACATGCCACCGAAGAAGATGAGGAGAGGATCCAGTCAGCTTTGGATAGTGAGGAAGCTATTCCTGGAAATGCAGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGTCGCTCTCCTCTTTACAGTAAGCAGATGCCTTATAATTCTGTTATATATCATGCATTTGGCCGTAGTTCTCCAGCAAGCTCATCCACAGAGCCCAAGGTCTATCGAAGAAGGGCCAGCAAGCAGAAAAAGGTAGTAGCTGGGAAGTGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCTAAAAGAGACTCTGAAGATGATGATGAGGTAAGCTTACATGGATGGTTATTACCTGACATGAGAATTGAGAGATCAGAAAGTGCCCACACAAACAAGTTTACTACTTCAAAATCTGGTAGGAAAAGGAAAATGACTGTAGAGAGTGGAAGAGTCAGGAAAGCTAGTTTCTCTGAGAGAGAATATGTTGTTTCAGATAATTCAGTTGAAGAGCAATACAACCAACAACAGAGGACTTTTTCTAGAAGCAAGCAAGCCAGATATTTTGAGAGAGATGATGCAGCATCAGAGGAGGATTATTCTCCTCGGCAGCAACATGGAAAGCCTATAAGCAAGCAAACAAAATGCATTGAAAGTGATGCAGTTTCAGATGATTCACTGGATGACAATTCTCATATGCAGCATGGAAGGAAACCTAAATTTATTGATAGTGATGTGGTCTCAGATGATACAATGGGATACGATTCTGATTGGCAACTGAGGGGAGAGCTTTGCAGCAAGCAAATTGAAGACTCAGAGAGAGATGGGATGTCAGAGGATTCAATGGATGGTATGTCTCATCAGCTGCAGAGGAAGACCCGTAAAAGCAAGCAAGGCAAATACATAGCTGAAGATGTAATTTCTGATGACCAAATGGAGGATCATTTTCAGAAGCAGCAAAGAAGGATTCCTAACAGCAGGCAAGCCAAATATCTTGCTGGAGAGGGTATTATGGTATCTGATGACCAACTGGAGCATCACACACACAAGCAGCAACAAAGGATCCCTAAAGGCAGGCGATCCAAATACCTTGCTGGAGAGGATATTACATCTGATGACCAACTGGAGGACCATTCTAGCAAGTGTCATGTAAGGATTCCTAAAAGGAGAAGAGCCAAATGCCTAGTTGAGGAAGATGTAATGTCTGATGACCAATTGGAGGATCACTTTCAGAAGCCACAAAGAAGCATTCCAAGGAGCAGGCAAAACAAAGGCAAGGATAAAGTTATGGTTGACTCAACTGAAAATCATTCTCATCTGCTGCATAGAACTCCTAAAAGGAAATATGCTAAAAGCATGGATGAAGACAACACAAATTCTGATGATCAAATGGACAATTCATCTCATCAGCAGCGAAGGAGGATTCTTCGAAGCCAGCAATCTAGATCAGAGACTCATAAGGAAATGAAACAATCTAACCCTCGCCGTGTGAAAGAACAGACATCCCAGCCTATAAAACGAGGCACTGGTCTGCTGATGAAACCAAAGACTTCTCAAAAATTGAAGCGGACTCCTAGAGTGCGGAAAAATCAATCTAACAACTGCAAAGAGTTTAATTTATGTATTGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGGAAAAGAGTTCCAAAAGTTGAGGAGTCTGAAGTAAAATCAAAAGAAAAGCAAGTCAACAGGAAAAAGGGGAACAATGCTACAGCTGTAAAGGTTTCAGCTGGCCATGCCAAAATGAAGGATGAGGAAGCAGAGTATCAGTGTGATATTGAGGGGTGCACTATGAGTTTTGGCTCAAAGCAGGAGCTAGCAGTGCATAAGAGAAATATCTGCCCTGTAAAGGGTTGTGGAAAGAAATTTTTCTCACATAAATATCTAGTGCAACACCGTCGAGTCCACGAGGATGATCGCCCCCTGAGGTGCCCTTGGAAGGGCTGCAAGATGACCTTCAAGTGGGCATGGGCTCGTACTGAACATATTCGAGTGCACACTGGGGCTCGTCCTTATGTTTGTGCTGAGCCAGGATGCGGGCAAACATTCAGATTTGTTTCTGATTTCAGTCGCCACAAGCGAAAGACTGGCCATTCAGCAAAGAAGAGTCGTTAA 4650 0.4378 MAGSAALASEPNAEVFSWLKSLPLAPEYRPTLAEFQDPISYIFKIEKEASKYGICKIVPPVPPSSKKTAIANLNRSLAARAASSDSSNSKSQPTFTTRQQQIGFCPRKPRPVQRPVWQSGEYYTFQEFEAKAKAFEKNYLKKCAKKGGLSPLEIETLYWKATVDKPFSVEYANDMPGSAFVPVNGKKCREAGEGVTLGETAWNMRGVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHAEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALSLCSRTPGDISAEPRSSRLRDKRKSEGETVIKELFVQDVLQNNDLLHGLGRGSAIVLLPRSSSDISVCSKLRVGSQQLTVNPGYSPNACNSEGMNSSKGFVSDDLVFSRNHGIKQLKGFYSVKEKFASLCERNRVSSSRVNDNLCSSSSKPLESNTERETSQGDGLSDQRLFSCVTCGILSFACVAIVQPREPAARYLMSADCSFFNDWVVGSGVSINKFATAHGDATISEKETFTGWKVKNTPDILYDNPVQSVEYQRQTEDQSHEEALRIKRQKDTSALSLLASAYGNSSDSEEDQVDSYIAVDDHESNVIDRPSGSISQKMSCLASHCQDCNASEVGVHDDYTQRAESEACGTTSGTAFKNTSCTLNYAQDRIPLLPHSDEDSSRLHVFCLEHAAEVEQQLRPIGGAHILLLCHPDYPKIEAEAKFVAEALGIDYIWKNLAYRHATEEDEERIQSALDSEEAIPGNADWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYHAFGRSSPASSSTEPKVYRRRASKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDDDEVSLHGWLLPDMRIERSESAHTNKFTTSKSGRKRKMTVESGRVRKASFSEREYVVSDNSVEEQYNQQQRTFSRSKQARYFERDDAASEEDYSPRQQHGKPISKQTKCIESDAVSDDSLDDNSHMQHGRKPKFIDSDVVSDDTMGYDSDWQLRGELCSKQIEDSERDGMSEDSMDGMSHQLQRKTRKSKQGKYIAEDVISDDQMEDHFQKQQRRIPNSRQAKYLAGEGIMVSDDQLEHHTHKQQQRIPKGRRSKYLAGEDITSDDQLEDHSSKCHVRIPKRRRAKCLVEEDVMSDDQLEDHFQKPQRSIPRSRQNKGKDKVMVDSTENHSHLLHRTPKRKYAKSMDEDNTNSDDQMDNSSHQQRRRILRSQQSRSETHKEMKQSNPRRVKEQTSQPIKRGTGLLMKPKTSQKLKRTPRVRKNQSNNCKEFNLCIEEEEEGGPSTRLRKRVPKVEESEVKSKEKQVNRKKGNNATAVKVSAGHAKMKDEEAEYQCDIEGCTMSFGSKQELAVHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSR 1549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0655 1549 Gene3D Classic Zinc Finger 1455 1541 - -
Dere03g0655 1549 ProSiteProfiles Zinc finger C2H2 type domain profile. 1457 1486 IPR013087 -
Dere03g0655 1549 MobiDBLite consensus disorder prediction 1026 1050 - -
Dere03g0655 1549 SUPERFAMILY beta-beta-alpha zinc fingers 1497 1541 IPR036236 -
Dere03g0655 1549 MobiDBLite consensus disorder prediction 81 104 - -
Dere03g0655 1549 MobiDBLite consensus disorder prediction 1380 1424 - -
Dere03g0655 1549 MobiDBLite consensus disorder prediction 1300 1329 - -
Dere03g0655 1549 ProSitePatterns Zinc finger C2H2 type domain signature. 1489 1511 IPR013087 -
Dere03g0655 1549 Pfam jmjN domain 26 59 IPR003349 -
Dere03g0655 1549 Gene3D Cupin 18 369 - -
Dere03g0655 1549 SMART cupin_9 196 365 IPR003347 -
Dere03g0655 1549 MobiDBLite consensus disorder prediction 1380 1410 - -
Dere03g0655 1549 SUPERFAMILY beta-beta-alpha zinc fingers 1455 1493 IPR036236 -
Dere03g0655 1549 ProSitePatterns Zinc finger C2H2 type domain signature. 1459 1481 IPR013087 -
Dere03g0655 1549 MobiDBLite consensus disorder prediction 1239 1274 - -
Dere03g0655 1549 ProSiteProfiles Zinc finger C2H2 type domain profile. 1487 1516 IPR013087 -
Dere03g0655 1549 FunFam Probable lysine-specific demethylase ELF6 1514 1543 - -
Dere03g0655 1549 SMART c2h2final6 1517 1543 IPR013087 -
Dere03g0655 1549 SMART c2h2final6 1434 1456 IPR013087 -
Dere03g0655 1549 SMART c2h2final6 1457 1481 IPR013087 -
Dere03g0655 1549 SMART c2h2final6 1487 1511 IPR013087 -
Dere03g0655 1549 MobiDBLite consensus disorder prediction 81 103 - -
Dere03g0655 1549 MobiDBLite consensus disorder prediction 1239 1363 - -
Dere03g0655 1549 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1483 - -
Dere03g0655 1549 MobiDBLite consensus disorder prediction 962 983 - -
Dere03g0655 1549 FunFam Probable lysine-specific demethylase ELF6 1484 1513 - -
Dere03g0655 1549 SUPERFAMILY Clavaminate synthase-like 211 380 - -
Dere03g0655 1549 Pfam JmjC domain, hydroxylase 229 347 IPR003347 -
Dere03g0655 1549 ProSiteProfiles JmjN domain profile. 25 66 IPR003349 -
Dere03g0655 1549 ProSitePatterns Zinc finger C2H2 type domain signature. 1519 1543 IPR013087 -
Dere03g0655 1549 MobiDBLite consensus disorder prediction 524 549 - -
Dere03g0655 1549 MobiDBLite consensus disorder prediction 1105 1124 - -
Dere03g0655 1549 SMART JmjN_1 24 65 IPR003349 -
Dere03g0655 1549 ProSiteProfiles JmjC domain profile. 199 365 IPR003347 -
Dere03g0655 1549 MobiDBLite consensus disorder prediction 1105 1133 - -
Dere03g0655 1549 ProSiteProfiles Zinc finger C2H2 type domain profile. 1517 1548 IPR013087 -
Dere03g0655 1549 FunFam Probable lysine-specific demethylase ELF6 18 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0655 Dere-ChrDere03 10741415 10750191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0655 1173 1548 C2H2 Transcription Factor Family AT3G48430 41.584 2.84e-72 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere03g0655 JmjC 2.2e-35 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0655 03 10741415 10750191 Dere03g0655 03 10741415 10750191 ECH