Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0653 ATGGGGTCTTCTGAATCTGTAGCGACTGCAATTTCGAATTCCAATAAGAACCCAGAATTGGGCTTCCGGTCGGCACCATCTTTTCCTAGTTCCGATCACGATTCTGGAACCTCAGATCTTAATCACCAGGTTGAGGCCGATGCACTTCGTGTGGAGTTTCAGAACAAGTTGATTTTGAAGGATGAGGATGGAGGGGGCGAGACTGAGAAAAAAGATTATGAGTTTGATGATGGTGAAAAAGTTTGTAATAAAGATGGTGCTGAGGAATCTGATAAGGGAGATGGGTGGGGTGAAGATTACGGGAATTGGAATGGAAATGAGGACAATAATTGGATTGAGTATGTGAACGGGAGTGAGAATAATAAGGTAGGTGGAGATTTTGATGTAGCTGTCAATGAAGTGGAGAGGAAGGAAGAGAAAAGCAGTGGTAGAAACCACCAGTACCCGGTGAGGCCCGAAGCAGAAGACTGTGCATTCTATCTCAAGACTGGAACTTGCAAATTTGGATTCTATTGCAAGTTTAATCACCCTGTTAGGAGGAAAAATCAGGCTGGTAAGGAGAAGACAGGAGAGATAGAAGAACCAGCAGATAGATCAGGGCCGGCCGAATGCAAGTATTATCTAACATCAGGAGGTTGTAAGTTTGGAAAAGCTTGTAAATATAACCACACAAGAGGAAAATCTTCGGCAGCCCCAATTCCAGAGCTTAATTTTCTTGGTCTGCCTATTCGTCTGGGAGAGAAAGAGTGTCCATATTACATGCGTACTGGCTCTTGTAAATTTGGAGCAAACTGCAAATTTAATCATCCAGACCCTACAGCAGTTGGAGGAGGTGATCTTCCTTCAGCATATGGTAATGGTGGGTCCATATCATTACAAGGTGTCTCACAGCCGCCTGTACCCTCCTGGTCCTCTCCAAGAACTTTAAATGAAACTGCTTTTCTGCCAATGATGCTTTCACCTAATCAAGGGGTTTCTCTCCAAAGTTCTGAATGGAATGCATTTCAGGCACCGGTCTACCTACCTGAGGGGAGTATGCATCCTCCTGCATATGTCATCAACAACCCAGCAATTGAAACAAATATTTATATGCATCATCAAAAGAGGATGCAGGTTGAAGACTTTCCTGAAAGGCCTGGGGAACCTGAATGTAGTTACTTCTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAAATTTCACCATCCAAGGAATCGGATTGCAAAGTTACCTTCTACATGCACCCTGAGTGACAAAGGTCTTCCTTTGAGACCTGATCAGAATGTCTGCACGCATTACAGTCGCTATGGAATATGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATAAACCCATCGCCCTCAACTGTGCCTGCACTTAATCAGCATTCCTCCTACTCAAACTCTGCTAGAGTAGAAGTGGCTGAAAATGGAGGGGCAACTGGGCAAGTGATGCAATAA 1467 0.4376 MGSSESVATAISNSNKNPELGFRSAPSFPSSDHDSGTSDLNHQVEADALRVEFQNKLILKDEDGGGETEKKDYEFDDGEKVCNKDGAEESDKGDGWGEDYGNWNGNEDNNWIEYVNGSENNKVGGDFDVAVNEVERKEEKSSGRNHQYPVRPEAEDCAFYLKTGTCKFGFYCKFNHPVRRKNQAGKEKTGEIEEPADRSGPAECKYYLTSGGCKFGKACKYNHTRGKSSAAPIPELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTAVGGGDLPSAYGNGGSISLQGVSQPPVPSWSSPRTLNETAFLPMMLSPNQGVSLQSSEWNAFQAPVYLPEGSMHPPAYVINNPAIETNIYMHHQKRMQVEDFPERPGEPECSYFLKTGDCKFKSNCKFHHPRNRIAKLPSTCTLSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPINPSPSTVPALNQHSSYSNSARVEVAENGGATGQVMQ 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0653 488 MobiDBLite consensus disorder prediction 1 101 - -
Dere03g0653 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 247 270 IPR000571 GO:0046872
Dere03g0653 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 200 223 IPR000571 GO:0046872
Dere03g0653 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 177 IPR000571 GO:0046872
Dere03g0653 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 380 405 IPR000571 GO:0046872
Dere03g0653 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 428 451 IPR000571 GO:0046872
Dere03g0653 488 Gene3D - 188 274 - -
Dere03g0653 488 SUPERFAMILY CCCH zinc finger 150 179 IPR036855 GO:0046872
Dere03g0653 488 Gene3D - 119 187 - -
Dere03g0653 488 PANTHER PROTEIN PHOSPHATASE RELATED 68 466 - -
Dere03g0653 488 ProSiteProfiles Zinc finger C3H1-type profile. 198 226 IPR000571 GO:0046872
Dere03g0653 488 SMART c3hfinal6 425 452 IPR000571 GO:0046872
Dere03g0653 488 SMART c3hfinal6 151 178 IPR000571 GO:0046872
Dere03g0653 488 SMART c3hfinal6 198 225 IPR000571 GO:0046872
Dere03g0653 488 SMART c3hfinal6 244 271 IPR000571 GO:0046872
Dere03g0653 488 SMART c3hfinal6 378 405 IPR000571 GO:0046872
Dere03g0653 488 SUPERFAMILY CCCH zinc finger 383 408 IPR036855 GO:0046872
Dere03g0653 488 MobiDBLite consensus disorder prediction 1 21 - -
Dere03g0653 488 ProSiteProfiles Zinc finger C3H1-type profile. 378 406 IPR000571 GO:0046872
Dere03g0653 488 SUPERFAMILY CCCH zinc finger 245 271 IPR036855 GO:0046872
Dere03g0653 488 SUPERFAMILY CCCH zinc finger 202 226 IPR036855 GO:0046872
Dere03g0653 488 SUPERFAMILY CCCH zinc finger 423 451 IPR036855 GO:0046872
Dere03g0653 488 MobiDBLite consensus disorder prediction 54 96 - -
Dere03g0653 488 ProSiteProfiles Zinc finger C3H1-type profile. 425 453 IPR000571 GO:0046872
Dere03g0653 488 Gene3D - 360 417 - -
Dere03g0653 488 Gene3D - 425 477 - -
Dere03g0653 488 ProSiteProfiles Zinc finger C3H1-type profile. 151 179 IPR000571 GO:0046872
Dere03g0653 488 ProSiteProfiles Zinc finger C3H1-type profile. 244 272 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0653 Dere-ChrDere03 10720133 10725685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0653 370 453 C2H2 Transcription Factor Family AT3G02830 47.059 5.56e-18 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere03g0653 zf-CCCH 1.9e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0653 03 10720133 10725685 Dere03g0653 03 10720133 10725685 ECH