Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0647 ATGACTATGCCTATACTCTTGGATCTTCGGTCTCACCAGACACCATTAGGAAGCTCGCAATCTACAGTGTTTTCGAAGTTTTTGAGTTATAGCATCTCTTACGAAGTTGCTAGAGAAAGGTGGGAAATATATAGTAGCAGAGGGATTGCCCCTAAGTGGGTGCCTGCCATTGGCGATGTATCTAACTCTAGAACAGGACAGAGACAACCTGGGATGCGTCAAAAGCGTCAACGACCACAGCGACATCCACAACCTCTTTCTACAAGCCAAGCTCCGACAACTCAGGAAACAGTACCCTCACGCCGTCATAATGCGAGGTTGAGGCAGACAAGAGTTGACAGAGAGAACGAAGGAAGCCTGAGAGAGAGGTGGGAGAAGTCATTGGAATGCTTTTTGTGCATCTCTCCTCGTTGTCAATGTCTTCCAGAAGGGCAGCAAGAGTATCTGCCTCCTAAGTTTGGTCCCACAGCATCAGCATTGCTTCATAAAGAATCCATCATTGAGGATTCAAGTGGTCATCAATGGAGGGTAATGGTATCAATTGTCAATAAGTCTTTTGCTTTTGATGAAGGATGGAATGCTTTTTCAAAGGACCATGGGCTTGAAGTTGGAAATTTGTTGGTATTCAATTACATCAGAAGATCGCACTTTGTTGTTAAGATTTTTGATACTTCTGGGTGTGAAAAGTTTGATTTTCCCAAACAAAGAATGCAGAAGAAAAGATGTAGGAGCGGAAACGACCATCATGCTAGAACAGACATGTTAAATAGGCAAGGTTCTTCTTCTGCTCCACGAGTCTCCAAGAGAAGAAAGCACATTGTTTCCTCTCTAGACAAGTCTGAAGAAGAGGAAGAAGAGGAGGAGAAGGAGGAAGAAGAAGAAGATGAAGACGAAGAGGAAGAGGAAGAGGAAGATGAAGAAGATGAAGAAGAAGAAGAAAAGTACACCCCATTTTCAGAGAACTGTGCCCCTTCGAAGTCCATTCCGAAGAAGGCACCAAAATTTAGGAACTTCTGGTCTCGTGGGTTACAGGAAAAATTTTCCACTCATTTCAAGAACCGAGTTGTAGCAGCGGAACAAGCCCAAGTCAGCACAGTGGTTCCTCCCACTCCTACTCAACTCCATTCTATTGTCAATTTAGAAAGAGCTATTCAGAATCTGTACACTAACATGGATGAGATCAAACAGGCTATTGGACAGAAGTGA 1206 0.4362 MTMPILLDLRSHQTPLGSSQSTVFSKFLSYSISYEVARERWEIYSSRGIAPKWVPAIGDVSNSRTGQRQPGMRQKRQRPQRHPQPLSTSQAPTTQETVPSRRHNARLRQTRVDRENEGSLRERWEKSLECFLCISPRCQCLPEGQQEYLPPKFGPTASALLHKESIIEDSSGHQWRVMVSIVNKSFAFDEGWNAFSKDHGLEVGNLLVFNYIRRSHFVVKIFDTSGCEKFDFPKQRMQKKRCRSGNDHHARTDMLNRQGSSSAPRVSKRRKHIVSSLDKSEEEEEEEEKEEEEEDEDEEEEEEEDEEDEEEEEKYTPFSENCAPSKSIPKKAPKFRNFWSRGLQEKFSTHFKNRVVAAEQAQVSTVVPPTPTQLHSIVNLERAIQNLYTNMDEIKQAIGQK 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0647 401 MobiDBLite consensus disorder prediction 238 254 - -
Dere03g0647 401 Gene3D - 133 227 IPR015300 -
Dere03g0647 401 SMART B3_2 130 225 IPR003340 GO:0003677
Dere03g0647 401 Pfam B3 DNA binding domain 148 224 IPR003340 GO:0003677
Dere03g0647 401 SUPERFAMILY ARM repeat 127 320 IPR016024 -
Dere03g0647 401 MobiDBLite consensus disorder prediction 81 100 - -
Dere03g0647 401 MobiDBLite consensus disorder prediction 280 315 - -
Dere03g0647 401 MobiDBLite consensus disorder prediction 56 118 - -
Dere03g0647 401 MobiDBLite consensus disorder prediction 238 329 - -
Dere03g0647 401 Coils Coil 273 314 - -
Dere03g0647 401 SUPERFAMILY DNA-binding pseudobarrel domain 147 227 IPR015300 -
Dere03g0647 401 Coils Coil 377 397 - -
Dere03g0647 401 PANTHER B3 DOMAIN-CONTAINING 148 311 - -
Dere03g0647 401 MobiDBLite consensus disorder prediction 101 118 - -
Dere03g0647 401 CDD B3_DNA 148 223 IPR003340 GO:0003677
Dere03g0647 401 ProSiteProfiles B3 DNA-binding domain profile. 149 225 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0647 Dere-ChrDere03 10602232 10608537 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0647 141 229 B3 DNA Binding Superfamily AT5G66980 36.842 2.40e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere03g0647 B3 1.9e-12 CL0405