Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0646 ATGAGAGAAGTGTGTGCGGAGTGTGCCCAGAAGTGTCTTACAGTTCATCGAAAAAAGAAAAAATCGTCGAATGAACCTTGTTCTTTCTTCAAGGTCATGATTGGAACCGATTTTTCCAGAGTTTTGTATCTGCCTCCTAAATTTGGTCCTATAGCATCAGCATTGCTTCATAAGAAAGCCATCATTGAGGATTCAAGTGGTCATCAATGGAAGGTGATAGTATCAATTGTCAATAAGTCTTATGCTTTTCAGGAAGGATGGAATACTTTTTCATTGGAGCATGGGCTTGAAGTTGGAAATTTTTTGGTATTCAATTACATCGGGGGATCACACTTTGTTGTCAAGATTTTTGACAAATCTGGGTGTGAAAAGTTTGAATTTCCCAAACAAAGAATTCAGAAGAAAAGAAGTAGGAGCAGAACTGACCTTGATGCTAGACATGACATGTTAGATAGCCAAGGTTCATCCTTGGACTCAAATGTGGAGAAAATGCAAAGCCAGTACGAGGTTGTTGATTTAGACGCTGCACAAAATAACGAAGAGAAAACTTCTGAAAATAATAATAGCAACAAAATGGTTGAATTATGGTACAAAGACAAAAACTGTGAAGATCCTTCTTACTTGATAGACCGAGACTTCAGAGGCAAAGAAAGGGAGGACAGGAGCCCCATGTTTGATGTGGTCAGCTGTGAAATATTGAACAATTCTGGTGTCAATGGGACAAGGAAATTTACAACCAGAAATGAAATAGTTGATGCAAGCTTCTATAACAGAGATCCTTTGCTTGAAGAGATGTTGCTTAGAGGGGCAACTCAAGCTCTGTCTGAAGTTGAATTGACTGGAAGAAGCCATTTTCTTGAAGAGATAGACAAGAGGACATTCTCCTGTGATGGACATTATTGTGGAGCTGAGATTCCTGAGCATCTTTTGATCACATATAATATGCAACTTGAAGCAAACAATGGGAACAATTTCCTTATATCTAACAGGGAAAGTCAAAAGTGCCACTTTGTTCAGAGCTCAGAAACTTATCAGGTAGTGACATCAAAAGAGAGAAGTGTTTTGCACATTGGCAATTGTGAAAATACTGAAAAGATGATTAGTGGGATCCATGAGTCCCAGGATGCTCCTATTTACCCTGGATTTTCAGAGGTCATTCTGGTAGACAAAGCTCAGAGTTCTCAAGCAATCGTTAAAGATCATGGCAGAATTGTCAATTCAGTGAAAGATGATGCTTTTAACTACGGTAGTCACCCTCACACTACAGCCACCTTTTCCTTTTGGCATATTGGTTCGGCCAATTGA 1305 0.3916 MREVCAECAQKCLTVHRKKKKSSNEPCSFFKVMIGTDFSRVLYLPPKFGPIASALLHKKAIIEDSSGHQWKVIVSIVNKSYAFQEGWNTFSLEHGLEVGNFLVFNYIGGSHFVVKIFDKSGCEKFEFPKQRIQKKRSRSRTDLDARHDMLDSQGSSLDSNVEKMQSQYEVVDLDAAQNNEEKTSENNNSNKMVELWYKDKNCEDPSYLIDRDFRGKEREDRSPMFDVVSCEILNNSGVNGTRKFTTRNEIVDASFYNRDPLLEEMLLRGATQALSEVELTGRSHFLEEIDKRTFSCDGHYCGAEIPEHLLITYNMQLEANNGNNFLISNRESQKCHFVQSSETYQVVTSKERSVLHIGNCENTEKMISGIHESQDAPIYPGFSEVILVDKAQSSQAIVKDHGRIVNSVKDDAFNYGSHPHTTATFSFWHIGSAN 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0646 434 MobiDBLite consensus disorder prediction 136 161 - -
Dere03g0646 434 ProSiteProfiles B3 DNA-binding domain profile. 27 120 IPR003340 GO:0003677
Dere03g0646 434 Gene3D - 20 122 IPR015300 -
Dere03g0646 434 MobiDBLite consensus disorder prediction 136 151 - -
Dere03g0646 434 PANTHER B3 DOMAIN-CONTAINING 20 201 - -
Dere03g0646 434 CDD B3_DNA 28 118 IPR003340 GO:0003677
Dere03g0646 434 SUPERFAMILY DNA-binding pseudobarrel domain 23 122 IPR015300 -
Dere03g0646 434 Pfam B3 DNA binding domain 29 119 IPR003340 GO:0003677
Dere03g0646 434 SMART B3_2 29 120 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0646 Dere-ChrDere03 10593503 10596350 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0646 29 144 B3 DNA Binding Superfamily AT5G66980 35.000 2.21e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere03g0646 B3 1.1e-13 CL0405