Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0620 ATGACCAACACTTGCAACAAGGACCAACTCCTCAATGCTCAGGATAGGAATCTCTGCGTATTTGCCTTGAGAATGGGAAGCGAAGGAGAGGCTTTGGTCGTGTGCGGTGACAAAAGCATGGGTTTAGGGTTAAAGATTTTGGACATGAACACAGGAGATGATCTTCTTCACGTACCGAATTGCTCTTCACCCTCTAGCGGGATGGTTTGCTTAAGGAACCAGTTTATTGCGGCATCGCAAATTAACAGACACGGGTCTGTAGGCGGTGGAGTCATTGGCATCTGGACTTTAAATAAGGCTCAACAACCTCTTTGGAACTACACATTGGAGGCCATTGGACCACTTTCTTGCACAAAAAATGGCACATATCTTGCTGGAGGAGCTTTGTCGGGAAATGCTTATCTCTGGGATGTGACTAGTGGAAATTTGCTGAAGACCTGGAGTGCTCATAATAAATCTCTGAACTGCATGCTGTTTTCAGATGATGATTCTCTCCTTATTTCTGGTTCAAATGATGGTATGATCTGTGTTTGGTCTTTGATTAGTTTGTTAGATGTGGAAGGAATGGGAAGCTTGCCTTCTTTATTACATTGTTTGTCAGGGCACAAGTCCACCGTAACAGGTCTCCTTACTACATCAGGCAATTACTTCTCAGTTTTAGTATCAAGTTCCCTTGATGGAACTTGCAAGGTTTGGGACTTTATCTCAGGAAGTCTTATGCAAACTCAGGTTCATCCTCTAGCAATAACTTCTATTGCTATTCACCAAGGAGAAGGGCTCTTGTTTTATGGATCAGTAAATGGAGATATAATTGTCAAAAAGCTTGATGTTGGTCTGGAGGAAGATCCTGATGTTGTCGCATTAGACCAATCAATTGAATTGAAAGGACACAATGGAGCCATAACTGCCCTGACCTCTAGTCAGGCAGGCCTAATATCTGCCTCTGAAGACTGCACAATCTGCATATGGGATGTCATCAGCTGGACAGTTATTCGAAGAATCAATATCGAAATGGGGAAAATAACTAATCTGGCGGTGGTTCTGCAGTCTTCAATGCACTCCACATCAAACTATAGGAGAGTGTCCAATCAGTATACTGTCTCTTCTCTCGACAAGTATCCTCAGCTGATCAACTCACTGAAGGGAACTACCAGTCTTCTTTCCTTAGATTGCCCCCAGAACGTGTTCGATGGACAGAAAGTTAACATGCCTGTGGACATGGCTATGGAAATGAAAGTGGAAACAAGTATACAGAATCGTGCATGGGCAACAAAGATGGCAAAGCATGTCATGGAAATAAACAAGCATTTGCAATCACGTCTGTTGGATTTGATGCAGGAAAGATTGTTTAAGCCAATCGAAACCGACGTTAAAAGAAGCACCAAAAAGAAGCTCAAGAAAGAGGTAGGAACCTTGACACTAGAAGCTGCAGTAATGGCCCAGTTGAAAGCAGTTTCTCCTTATTCAAGCTCCAATTTTGCTTCCTCGGGGCATAGAACAGAGCATCTACTGCTTCCCCAAACGTCGAATGTGAAGCCATCATCATTCAGACAGTTGGGCCCAAGAACAAGCGTTGGTATCAGAAGACTTCCAGTAATAGAAGCAATTTTACGCAGTGACACAGAGATAGAAGTTTCCAAAACCAAGGGTAGTGGGCTTCGTGGAAAATTAAATAAGGTTGTGCTAGCGTATAGTGGTGGCTTAGACACATCAGTCATTGTCCCATGGTTAAGAGAGAATTATGGTTGTGATGTTGTTTGCTTCACTGCTGATGTTGGCCAAGGTTTAAAAGAGTTGGAAGGTTTAGAAGAGAAGGCCAAAGCCAGTGGGGCCTCTCAGTTGGTGGTGAAGGACTTGAAGGAGGAATTTGCCGAGGATTACATATTCCCTTGTTTGCGTGCTGGTGCAATTTATGAGCGGAAGTATCTGCTTGGGACCTCAATGGCTCGCCCTGTTATTGCAAAAGCCATGGTGGATGTTGCCAAAGAAGTTGGAGCTGATGCCGTCTCTCATGGTTGTACAGGGAAAGGAAATGATCAGGTTCGGTTTGAGCTCACATTCTTTGCTCTAAACCCCAAGCTCAATGTTGTGGCTCCATGGAGGGAGTGGGACATTACTGGGAGAGAAGATGCTATTGAGTATGCAAAGAAGCATAATGTACCTGTTCCTGTGACAAAGAAATCCATATACAGCAGAGACAGAAACCTTTGGCACCTTAGCCATGAGGGTGATATTTTGGAAGACCCAGCTAATGAGCCAAAAAAAGATATGTACATGATGTCGGTGGATCCAGAGGATGCTCCAAATCAAGCAGAATATGTGGAAATTGGGATTGAGTCAGGGCTACCCGTTTCAGTCAATGGGAAGAGGCTTTCACCTGCATCCTTACTCTCTGACCTCAATGAGATTGGTGGTAGGCACGGAATTGGTCGGATTGACCTGGTTGAAAACCGGCTTGTAGGTATGAAGAGCCGGGGAGTTTATGAAACTCCTGGTGGAACCATCCTTTTTGCTGCAGCACGCGAGTTAGAGTCCCTAACACTTGACCGTGAAACAATCCAGGTCAAAGATTCATTAGCCCTTAAATATGCAGAGCTAGTGTATGCTGGGAGATGGTTTGATCCGCTCCGGGAATCCATGGATGCCTTCATGGAGAAAATCACTGCAACAACAACAGGTTCTGTGACATTGAAACTATACAAGGGTTCTGTTACCGTGACAGGCCGGAAGAGCCCCTATAGCCTATACAGGCAGGATATTTCGTCATTCGAGAGTGGTCAGATATATGATCAAGCCGATGCTGCCGGGTTTATACGGCTTTATGGACTTCCAATGAGGGTGCGGGCAATGCTTGAGCAGGGTATCTGA 2868 0.4467 MTNTCNKDQLLNAQDRNLCVFALRMGSEGEALVVCGDKSMGLGLKILDMNTGDDLLHVPNCSSPSSGMVCLRNQFIAASQINRHGSVGGGVIGIWTLNKAQQPLWNYTLEAIGPLSCTKNGTYLAGGALSGNAYLWDVTSGNLLKTWSAHNKSLNCMLFSDDDSLLISGSNDGMICVWSLISLLDVEGMGSLPSLLHCLSGHKSTVTGLLTTSGNYFSVLVSSSLDGTCKVWDFISGSLMQTQVHPLAITSIAIHQGEGLLFYGSVNGDIIVKKLDVGLEEDPDVVALDQSIELKGHNGAITALTSSQAGLISASEDCTICIWDVISWTVIRRINIEMGKITNLAVVLQSSMHSTSNYRRVSNQYTVSSLDKYPQLINSLKGTTSLLSLDCPQNVFDGQKVNMPVDMAMEMKVETSIQNRAWATKMAKHVMEINKHLQSRLLDLMQERLFKPIETDVKRSTKKKLKKEVGTLTLEAAVMAQLKAVSPYSSSNFASSGHRTEHLLLPQTSNVKPSSFRQLGPRTSVGIRRLPVIEAILRSDTEIEVSKTKGSGLRGKLNKVVLAYSGGLDTSVIVPWLRENYGCDVVCFTADVGQGLKELEGLEEKAKASGASQLVVKDLKEEFAEDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAKEVGADAVSHGCTGKGNDQVRFELTFFALNPKLNVVAPWREWDITGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPANEPKKDMYMMSVDPEDAPNQAEYVEIGIESGLPVSVNGKRLSPASLLSDLNEIGGRHGIGRIDLVENRLVGMKSRGVYETPGGTILFAAARELESLTLDRETIQVKDSLALKYAELVYAGRWFDPLRESMDAFMEKITATTTGSVTLKLYKGSVTVTGRKSPYSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLEQGI 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0620 955 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 333 IPR001680 GO:0005515
Dere03g0620 955 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 294 325 - -
Dere03g0620 955 ProSitePatterns Argininosuccinate synthase signature 1. 563 571 IPR018223 GO:0004055|GO:0005524|GO:0006526
Dere03g0620 955 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Dere03g0620 955 PRINTS G protein beta WD-40 repeat signature 311 325 IPR020472 -
Dere03g0620 955 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Dere03g0620 955 Gene3D HUPs 559 728 IPR014729 -
Dere03g0620 955 NCBIfam argininosuccinate synthase 559 948 IPR001518 GO:0004055|GO:0005524|GO:0006526
Dere03g0620 955 SUPERFAMILY Argininosuccinate synthetase, C-terminal domain 727 953 IPR024074 GO:0004055
Dere03g0620 955 ProSiteProfiles Trp-Asp (WD) repeats profile. 147 180 IPR001680 GO:0005515
Dere03g0620 955 CDD Argininosuccinate_Synthase 560 944 IPR023434 GO:0004055
Dere03g0620 955 Gene3D - 2 242 IPR015943 GO:0005515
Dere03g0620 955 Gene3D Single helix bin 929 954 - -
Dere03g0620 955 Gene3D - 243 358 IPR015943 GO:0005515
Dere03g0620 955 FunFam Argininosuccinate synthase 554 730 - -
Dere03g0620 955 ProSitePatterns Argininosuccinate synthase signature 2. 672 683 IPR018223 GO:0004055|GO:0005524|GO:0006526
Dere03g0620 955 FunFam Argininosuccinate synthase 731 954 - -
Dere03g0620 955 Pfam Arginosuccinate synthase 561 947 IPR001518 GO:0004055|GO:0005524|GO:0006526
Dere03g0620 955 SUPERFAMILY WD40 repeat-like 20 347 IPR036322 GO:0005515
Dere03g0620 955 Hamap Argininosuccinate synthase [argG]. 557 953 IPR023434 GO:0004055
Dere03g0620 955 PANTHER ARGININOSUCCINATE SYNTHASE 556 953 IPR001518 GO:0004055|GO:0005524|GO:0006526
Dere03g0620 955 ProSitePatterns Trp-Asp (WD) repeats signature. 311 325 IPR019775 -
Dere03g0620 955 Pfam WD domain, G-beta repeat 141 179 IPR001680 GO:0005515
Dere03g0620 955 Pfam WD domain, G-beta repeat 195 233 IPR001680 GO:0005515
Dere03g0620 955 Pfam WD domain, G-beta repeat 293 324 IPR001680 GO:0005515
Dere03g0620 955 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 147 180 - -
Dere03g0620 955 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 558 760 - -
Dere03g0620 955 ProSiteProfiles Trp-Asp (WD) repeats profile. 199 242 IPR001680 GO:0005515
Dere03g0620 955 SMART WD40_4 100 137 IPR001680 GO:0005515
Dere03g0620 955 SMART WD40_4 236 274 IPR001680 GO:0005515
Dere03g0620 955 SMART WD40_4 192 233 IPR001680 GO:0005515
Dere03g0620 955 SMART WD40_4 140 179 IPR001680 GO:0005515
Dere03g0620 955 SMART WD40_4 287 324 IPR001680 GO:0005515
Dere03g0620 955 Gene3D Argininosuccinate synthetase, chain A, domain 2 619 909 IPR024074 GO:0004055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0620 Dere-ChrDere03 10317114 10329299 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0620 77 325 U-box Gene Family AT2G33340 27.413 8.30e-11 63.5