Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0618 ATGGCTAGCTGTAGTTCTCTTTCTTTGTGTCCGTACAGCCTTTATTGCCGCCCAAACCCAAAAAGGCGTCCCATTTTGTGCTCGGTTGGCTCTTCTTCGCTCGTAGGTGCTGATGGAGCTAAAGTACCCCGCAGAAGATCAAGAAGAATTGAAGGTCCTGGAAAAAGCATGGAAGACTCTGTTCAACGCAAGATGGAGCAATTTTATGAGGGATCTAATGGACCACCCCTCCGAGTTCTTCCTATTGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGGAACCATGATCGCTATATCCTGATTGATGCTGGAGTCATGTTTCCAGACTATGATGAGCTTGGAGTCCAAAAGATTATACCTGATACGACATTTATAAGAAAATGGAGCCACAAAATTGAAGCAGTTGTTATAACACACGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATACCGGCATTGGATTCCCATACACCAATTTTCGCTTCTTCCTTTACAATGGAGCTTATTAGAAAACGTTTGAAGGAGCATGGTATTTTTGTTCCATCAAGACTCAAAACATTTAGAACAAGGAAGAAGTTTGTGGCTGGGCCATTTGAAATCGAGCCTATCAGAGTGACCCATTCTATTCCTGATTGTTGTGGATTAGTTCTTCGATGTTCTGATGGTACTATTCTTCATACGGGGGATTGGAAGATTGACGAATCACCATTAGATGGGAAAGTATTTGACCGTGAAGCTTTGGAGGAACTCTCTAAAGAAGGAGTAACATTAATGATGAGTGATTCAACAAACATACTTTCACCTGGAAGGACAATCAGTGAATCTGTTGTGGCAGATGCACTATTAAGGCATATTTCATCTACTAAAGGAAGGGTTATTACAACTCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTGAAAGCCGCAGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCTTTACGGACATATTTGGATGCAGCTTGGAAGGATGGAAAGGCACCGTTTGATCCATCCACTCTGGTGAAAGTAGAGGATATTGATGCTTATGCTCCTAAGGATTTGCTGATTGTAACAACTGGATCTCAGGCAGAACCACGTGCTGCCTTGAATCTTGCATCATATGGAGGTAGTCATTCCTTCAAACTGAACAAGGAAGATGTAATTTTGTACTCGGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGAAAATGCTAAACCGCATATCAGAGATTGGATCATCAATAGTTATGGGGAAGAACGAAGGGCTGCACACGTCTGGTCATGGGTATCGTGGAGAATTGGAGGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTTCCCATACATGGAGAACTCTTGTTCCTGAAGGAGCATGAATTACTTGGAAAGTCAACTGGCATTCGACACACGACTGTTATTAAGAATGGAGAGATGCTTGGCGTTTCACACTTAAGAAATAGAAGGGTCCTTTCTAATGGCTTTGTTTCCCTTGGAAAAGAGAATTTACAGTTGAAGTACAGTGATGGGGACAAAGCATTTGGTACATCAAGTGAACTCTTTATTGATGAAAGATTGAGAATTGCTTTAGATGGCATTATTGTGGTCAGCATGGAAATATTTCGCCCTCAAAATTTTGAGTGTCATGTTGAAAATACCTTAAAAGGGAAGATAAGAATTTCCACAAGATGTCTATGGCTTGACAAAGGGAAGCTGTTGGATGCACTTCATAAAGCTGCTCATGCTGCACTTTCAAGCTGCCCTGTGAACTGTCCACTGGCTCACATGGAAAGGACTGTAGCTGAGGTATTGAGGAAGTTGGTGAGGAAGTATAGTGGCAAAAGGCCCGAAGTTATTGCCATTGCCACAGAAAACCCTGCAGCTGTTCTTGCTGATGAGGTAAAAACAAGGCTGTCAGGAAAATCGCATTTGGGTCTTGACATACCATCATTGAGAAAAGCAGTGGACAGACGTACAGAGGAAAAGAAGTCCACAAAAATGCCAATAAAAGGAGATGGTGGCACAGATATTGAAGGACTCCTACCTGTGGAAGATACTCGTACTCCAAGCGAAGCTGAGGGTGATTTCCCCAATTCCGAGGATTCTGATGAATTTTGGAAATCATTCATCATACCGTCAACTGCTGAAAAGTCAATCAAAGCTAACAATGGTTATGTTCCACGAAAGGAGCATGAATCCCAGCTGAAAAAAGATGGTTCTGAAGACACTGAAGAAGGCAATTCTGAAGCCAAGCCTTCAAAAACTGTAAAGAGAAATAAATGGAAACCTGAGGAAGTTAAGAAGCTTATTGGTATGCGTGGGGAGCTGCATGAGAGATTTCAAGTTGTGAAGGGAAGAATGGTCCTCTGGCAAGAGATATCTCAAAAGTTGTTGGCTGATGGGATCAGCAGAAGTCCAGGGCAGTGTAAATCACTGTGGACTTCTTTGATACAGAAATATGAGGAGATCAAGAATGGAAAGGAAAGCAAGAAAAGTTGGCTATTTCTCGAGGACATGGACAGGGTATTGTCTGACAACGAAGCAAGAGCAGCAAAATGA 2592 0.4221 MASCSSLSLCPYSLYCRPNPKRRPILCSVGSSSLVGADGAKVPRRRSRRIEGPGKSMEDSVQRKMEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKEHGIFVPSRLKTFRTRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDESPLDGKVFDREALEELSKEGVTLMMSDSTNILSPGRTISESVVADALLRHISSTKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPFDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGGSHSFKLNKEDVILYSAKVIPGNESRVMKMLNRISEIGSSIVMGKNEGLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFVSLGKENLQLKYSDGDKAFGTSSELFIDERLRIALDGIIVVSMEIFRPQNFECHVENTLKGKIRISTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHMERTVAEVLRKLVRKYSGKRPEVIAIATENPAAVLADEVKTRLSGKSHLGLDIPSLRKAVDRRTEEKKSTKMPIKGDGGTDIEGLLPVEDTRTPSEAEGDFPNSEDSDEFWKSFIIPSTAEKSIKANNGYVPRKEHESQLKKDGSEDTEEGNSEAKPSKTVKRNKWKPEEVKKLIGMRGELHERFQVVKGRMVLWQEISQKLLADGISRSPGQCKSLWTSLIQKYEEIKNGKESKKSWLFLEDMDRVLSDNEARAAK 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0618 863 SMART Lactamase_B_5a 89 286 IPR001279 -
Dere03g0618 863 Pfam Myb/SANT-like DNA-binding domain 769 852 IPR044822 -
Dere03g0618 863 MobiDBLite consensus disorder prediction 732 770 - -
Dere03g0618 863 Gene3D - 278 428 IPR042173 -
Dere03g0618 863 MobiDBLite consensus disorder prediction 41 57 - -
Dere03g0618 863 PANTHER RIBONUCLEASE J 1 863 - -
Dere03g0618 863 SUPERFAMILY Metallo-hydrolase/oxidoreductase 77 491 IPR036866 -
Dere03g0618 863 MobiDBLite consensus disorder prediction 734 770 - -
Dere03g0618 863 MobiDBLite consensus disorder prediction 666 680 - -
Dere03g0618 863 MobiDBLite consensus disorder prediction 38 57 - -
Dere03g0618 863 MobiDBLite consensus disorder prediction 666 714 - -
Dere03g0618 863 Gene3D - 81 493 IPR036866 -
Dere03g0618 863 CDD GT1 770 835 - -
Dere03g0618 863 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 434 475 IPR011108 -
Dere03g0618 863 Pfam Beta-lactamase superfamily domain 100 236 IPR001279 -
Dere03g0618 863 ProSiteProfiles Myb-like domain profile. 764 828 IPR001005 -
Dere03g0618 863 CDD RNaseJ_MBL-fold 80 491 - -
Dere03g0618 863 Gene3D - 772 833 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0618 Dere-ChrDere03 10296465 10307058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0618 771 855 Trihelix Transcription Factor Family AT2G38250 34.483 1.17e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere03g0618 Lactamase_B_2 5.3e-11 CL0381