Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0612 ATGGTTTCAACGAGACGTAGTGGATCTCTCTCTGGCAACAATACCAAAAGATCTTCCTCCTCGGAAGATAAGCCTCCCTCACCGAAGCGTCAAAAGGCCGACAATGGTGGTGCGTCGGAGAAACCGATGCCGGCAGTGGACAATTCTAAAGAAGTCTGTACGCCCGAGCCGGCGGCTGATCCTGGAGAATGCGATGCTCAGATCGCTGGAGAGGGTACTGGTGATGGTCTGAGTTCTGGCAAGGGCGATGCTGCGGCGGCTGTCGCTGTGGCGCCGCCGATCGCTGATGGGTCTTCGCCGACTTTGGTGGTTGATAAGCCGAGGGGTTCTGTGTCCTCGTGGAGTATATATCAGAAGCAAAATCCAAGTCTTGAGACTTCGGCGCCTTGGTGCAGGCTCCTGTCGCAGTCAGCCCAGAACCCAAATGTTGTCATTTGCACACCGAACTTCACTATTGGTTCTAGTAGAAACTGCAACTTTCCATTGAAGGATCAGACTATAAGTGGAAATTTATGCAAGATTAAGCATACCCAGCGTGAGGGATGTTCTGTAGCTTTGCTAGAAAGTACGGGTAGTAAAGGATCTGTGCTAGTTAATGGGACACTTGTCAAGAAGAACACCAGCTGCGTGCTTAACTCAGGGGATGAAGTGGCTTTTGTTAAGGGTGCAGAAGTTCAGAGTGGTGTAGGGAAACTTTTGCAGCTTGAAAGGAGAAATGGAGACCCTTCAGCTGTGGATGGGGCTTCGATTTTGGCATCTCTTTCTAGCTTCAGACAGGATCTCTCAAGATGGAAATCAACCTCTCATAATGCCAATAAAGCTCACCAGGGCACTGACGTCTCTGCTCATTCTGCTCTACATGAGAATACAGAAATTGAGCTTGATGACCTGGTAGGCAACTCTGCTCCAAATGTTGGGAGTGATAAAGCAGCCGATGTCGGAGCAAGCGACAAGAATCCTCCAATGGAATGCGATCCAGATGCTAGCATGGAGGCAGGCAATGTAAAACTTTCTGGGATGAATGATTTCCTAAGGCCTTTCTTCAGGATCTTAGCTCGATCTAGTTGTAAACTGAAATTGAGCAAAAGTATCTTTAAACAGGTACTGGAAGAAAGAAATGGGACGAGGGATATGCTGGCAGCATCAACCTCAGGTATGTCTGTGCGCTGTGCTGTGTTTAAAGAAGATGTTCGTGCTGCAATATTGGATGGAAAAGATATAGAAGTTTCATTTGACAACTTTCCATACTATCTAAGCGAGAACACAAAAAATGTCTTGATTGCAGCTTGCTTTATTCACCTGAGGCATAAGGAACATGCAAAATATGCAACAGATCTTACAACTATCAACCCACGTGTTTTACTTTCTGGGCCTGCAGGGTCAGAAATTTATCAGGAGATGTTGGCAAAGGCACTTGCCAATCACTTTGGTGCTAAGTTGCTCATATTTGATAGCCATTTGATTTTGGGTGGTTTATCATCCAAGGAAGCTGAGCTACTCAAGGATGGATTTATTGCTGAAAAATCCTGCAACTGCGCCAAGCAAAGTTCTACAGCCATGGACCCATCAGCTAGTGAAACACATACAGCTAGCTCTTTAAATATACCTACTTCATATGGCCTAGAATCTCAACCTAAGATGGAGACCGATGCCGCACCTTCTACTTCTGGGGCAGCTAAAAATTGCTTGTTTAAATATGGTGACAGGGTAAAATATAGCTGCTCATCTTCTGGTGGCATGTATCAGACATGTTCAAGGGGTCCACTAAATGGAAGTCGGGGAAAGGTTGTCTTATGTTTTGATGATAATCCTTTGTCAAAAATTGGTGTAAGATTTGATAAACCCGTACCTGATGGAGTTGATCTTGGTGGTGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAATGTTTCTGATCTTCGATTGGAAAACAGTGGTGTGGAAGAATTGGACAAATTGCTTATCAATACATTGTTTGAGGTTGTTTATAGTGAGAGCAGAAGTGCACCTTTCATTTTGTTCATGAAAGATGCTGAGAAGTCAATTGTGGGAAATGGAGATCCATATTCATTTAAAAGTAGGCTTGAAAAGCTTCCAGACAATGTGATTGTAATAGGCTCGCACACTCACACTGACAGTCGAAAGGAGAAGTCACATCCTGGGGGTTTGCTTTTTACAAAGTTTGGCAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCGGATAGTTTTGGAAGATTGCATGAGAGGGGGAAGGAAGTCCCAAAGCCAAACAAAATGTTGACTAAGCTTTTCCCTAATAAAGTAACAATTCACATGCCACAGGATGAGGCACTTCTAGCATCCTGGAAGCAGCAGTTGGATCGAGATGCTGAGACTTTAAAAATTAAAGGAAATTTGCATCACCTGCGCACAGTTTTGGGCCGCTGTGGGATGGAATGTGAAGGACTTGAGACTTTGTGCATTAAGGACCAGACACTTACAAATGAAAATGCAGAGAAGATAGTTGGTTGGGCTTTAAGCCACCACCTCATGCAGAACCCTGAAGCTGATCCTGATTCGAAGCTTGTATTGTCTTGTGAGAGCATCCAGTATGGAAATGGGATCTTGCAGGCCATCCAGAATGAGTCAAAGAGCTTGAAGAAGTCTCTGAAGGATGTTGTAACAGAAAATGAGTTTGAAAAGAGGCTTTTGGCTGATGTAATTCCACCTGGTGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTAAAGGATACACTGAAGGAGTTGGTGATGCTTCCTCTGCAGAGGCCTGAGCTTTTTTGCAAGGGGCAATTAACCAAGCCTTGCAAGGGAATCCTATTGTTTGGCCCCCCTGGAACAGGAAAGACAATGCTCGCAAAGGCTGTTGCTACCGAAGCTGGTGCTAACTTCATCAACATTTCAATGTCAAGCATAACATCTAAGTGGTTTGGGGAGGGTGAAAAATATGTGAAAGCTGTTTTCTCTCTGGCCAGTAAAATTGCTCCTAGTGTTATATTTGTTGATGAAGTCGACAGCATGTTGGGTAGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGTAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGTACAAAGGATACTGAGCGAGTTCTTGTACTTGCAGCCACTAATAGGCCTTTTGACCTTGATGAGGCTGTCATCCGGCGGCTGCCACGGAGGTTGATGGTAAATTTGCCAGATGCTCCAAATAGAGCGAAAATATTGAAAGTTATACTATCCAAAGAGGATTTGTCTACTGATGTTGACTTGGATGCAATTGCAAGTATGACTGATGGGTACTCTGGAAGTGATCTTAAGAATCTCTGTGTGACTGCTGCACACCGACCAATTAAAGAGATATTAGAAAAGGAAAAAAAGGAGCGTGCTGCTGCCCTAGCGGAAGGTAGACCTCCTCCGGCATTAAGTGGCAGCTCTGATATCCGATCTTTAAACATGGAAGACTTTAAAGATGCTCATGAACGGGTATGTGCTAGTGTTTCATCTGAATCCGTGAATATGACTGAGCTCTCACAATGGAATGAACTCTATGGTGAAGGTGGTTCAAGAAGAAAGAAAGCACTCAGCTATTTCATGTGA 3642 0.4451 MVSTRRSGSLSGNNTKRSSSSEDKPPSPKRQKADNGGASEKPMPAVDNSKEVCTPEPAADPGECDAQIAGEGTGDGLSSGKGDAAAAVAVAPPIADGSSPTLVVDKPRGSVSSWSIYQKQNPSLETSAPWCRLLSQSAQNPNVVICTPNFTIGSSRNCNFPLKDQTISGNLCKIKHTQREGCSVALLESTGSKGSVLVNGTLVKKNTSCVLNSGDEVAFVKGAEVQSGVGKLLQLERRNGDPSAVDGASILASLSSFRQDLSRWKSTSHNANKAHQGTDVSAHSALHENTEIELDDLVGNSAPNVGSDKAADVGASDKNPPMECDPDASMEAGNVKLSGMNDFLRPFFRILARSSCKLKLSKSIFKQVLEERNGTRDMLAASTSGMSVRCAVFKEDVRAAILDGKDIEVSFDNFPYYLSENTKNVLIAACFIHLRHKEHAKYATDLTTINPRVLLSGPAGSEIYQEMLAKALANHFGAKLLIFDSHLILGGLSSKEAELLKDGFIAEKSCNCAKQSSTAMDPSASETHTASSLNIPTSYGLESQPKMETDAAPSTSGAAKNCLFKYGDRVKYSCSSSGGMYQTCSRGPLNGSRGKVVLCFDDNPLSKIGVRFDKPVPDGVDLGGACEGGQGFFCNVSDLRLENSGVEELDKLLINTLFEVVYSESRSAPFILFMKDAEKSIVGNGDPYSFKSRLEKLPDNVIVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHERGKEVPKPNKMLTKLFPNKVTIHMPQDEALLASWKQQLDRDAETLKIKGNLHHLRTVLGRCGMECEGLETLCIKDQTLTNENAEKIVGWALSHHLMQNPEADPDSKLVLSCESIQYGNGILQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPGDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILSKEDLSTDVDLDAIASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAALAEGRPPPALSGSSDIRSLNMEDFKDAHERVCASVSSESVNMTELSQWNELYGEGGSRRKKALSYFM 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0612 1213 Coils Coil 869 889 - -
Dere03g0612 1213 Pfam ATPase family associated with various cellular activities (AAA) 949 1078 IPR003959 GO:0005524|GO:0016887
Dere03g0612 1213 MobiDBLite consensus disorder prediction 1143 1162 - -
Dere03g0612 1213 MobiDBLite consensus disorder prediction 299 325 - -
Dere03g0612 1213 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 907 1083 - -
Dere03g0612 1213 Gene3D - 907 1188 IPR027417 -
Dere03g0612 1213 MobiDBLite consensus disorder prediction 518 556 - -
Dere03g0612 1213 Gene3D - 129 228 - -
Dere03g0612 1213 SMART AAA_5 945 1082 IPR003593 GO:0016887
Dere03g0612 1213 SUPERFAMILY SMAD/FHA domain 113 221 IPR008984 GO:0005515
Dere03g0612 1213 MobiDBLite consensus disorder prediction 22 36 - -
Dere03g0612 1213 Pfam AAA+ lid domain 1102 1137 IPR041569 -
Dere03g0612 1213 MobiDBLite consensus disorder prediction 1 21 - -
Dere03g0612 1213 CDD RecA-like_ATAD1 912 1078 - -
Dere03g0612 1213 MobiDBLite consensus disorder prediction 1 80 - -
Dere03g0612 1213 Pfam FHA domain 151 219 IPR000253 GO:0005515
Dere03g0612 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 908 1188 IPR027417 -
Dere03g0612 1213 ProSitePatterns AAA-protein family signature. 1052 1071 IPR003960 GO:0005524|GO:0016887
Dere03g0612 1213 Gene3D - 1081 1175 - -
Dere03g0612 1213 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 393 1212 - -
Dere03g0612 1213 MobiDBLite consensus disorder prediction 518 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0612 Dere-ChrDere03 10239315 10256004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0612 908 1157 Calmodulin-binding Proteins AT3G56690 40.467 3.65e-42 166