Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0610 ATGGCAGTTGCATTCTTTGATGTGAACTCAGCTGCTGGGCTGAAGAAGCTTGACGAATACCTTCTCACCCGCAGCTACATCACTGGGTACCAGGCTTCAAAGGACGATGTTACTGTATATGCTGCCTTGTCAAAGGCCCCATCGGCTGAATATGTGAACGTGTCCCGGTGGTACAAGCACATTGATGCTTTATTAAGAATATCGGGTGTTTCTGGCGAGGGATCTGGTGTCACTGTGGAGGGATCTCTTCCCGTAACAGATGAGACCATTGCCACTCCTCCACCTGCTGACACAAAGGCTACATCAGCTGAGGATGATGATGATGATGATGTAGATTTGTTTGGTGAAGAGACAGAGGAGGAGAAGAAGGCTGCTGAAGAACGTGCAGCCGCTGTGAAGGCATCTTCAAAGAAGAAAGAGTCTGGGAAGTCATCTGTTCTGCTGGATGTGAAGCCCTGGGATGATGAAACTGACATGAAAAAGCTTGAAGAAGCAGTGAGAAGTGTTCAGATGGAGGGGCTGCTTTGGGGTGCTTCCAAGCTTGTCCCTGTTGGGTACGGTATCAAGAAATTGACAATTATGCTTACTATTGTGGATGACCTGGTCTCTGTTGACAACCTCATTGAGGAACGTCTCATGAATGAGCCAATTAACGAACATGTCCAGAGCTGTGACATTGTGGCGTTCAATAAAATATAATTTTGGATTCATTGGACTTGGACATTCATGGCAACGGATGAAAGTCTCTAG 750 0.4667 MAVAFFDVNSAAGLKKLDEYLLTRSYITGYQASKDDVTVYAALSKAPSAEYVNVSRWYKHIDALLRISGVSGEGSGVTVEGSLPVTDETIATPPPADTKATSAEDDDDDDVDLFGEETEEEKKAAEERAAAVKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLTIMLTIVDDLVSVDNLIEERLMNEPINEHVQSCDIVAFNKIXFWIHWTWTFMATDESL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0610 249 CDD EF1B 146 232 IPR014038 GO:0003746|GO:0006414
Dere03g0610 249 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 107 115 IPR001326 GO:0003746|GO:0005853|GO:0006414
Dere03g0610 249 MobiDBLite consensus disorder prediction 117 135 - -
Dere03g0610 249 FunFam Elongation factor 1-beta 1 like 137 232 - -
Dere03g0610 249 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 221 232 IPR001326 GO:0003746|GO:0005853|GO:0006414
Dere03g0610 249 MobiDBLite consensus disorder prediction 102 116 - -
Dere03g0610 249 Coils Coil 115 135 - -
Dere03g0610 249 Pfam EF-1 guanine nucleotide exchange domain 145 232 IPR014038 GO:0003746|GO:0006414
Dere03g0610 249 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 232 - -
Dere03g0610 249 MobiDBLite consensus disorder prediction 76 135 - -
Dere03g0610 249 SUPERFAMILY GST C-terminal domain-like 9 67 IPR036282 -
Dere03g0610 249 Gene3D - 6 78 - -
Dere03g0610 249 SUPERFAMILY eEF-1beta-like 140 232 IPR036219 -
Dere03g0610 249 SMART EF1_GNE_2 143 232 IPR014038 GO:0003746|GO:0006414
Dere03g0610 249 FunFam Elongation factor 1-delta 1 3 78 - -
Dere03g0610 249 Gene3D - 136 232 IPR014717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0610 Dere-ChrDere03 10234433 10236089 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0610 4 232 Eukaryotic Initiation Factors Gene Family AT2G18110 81.223 2.06e-119 338