Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0585 ATGGACTGGAATATGAAAGCAGCTTCATGGGATTTGGCTGAATTAGATGAAGCAGCAGCCTTGCCCAACATAGAAACAATTGATGGTTCAAGCAGATTAGGAGTCGGTACAAGTAAAGGGGAATTTTCTGTGGATTTGAAGCTGGGTCAAGTGGGGAATTCTTGTAATGAACCATCAGTGGCCAAGTGGAAAGATGTTGGTGGTGTCTCCAAGGTGATGACATCTTCATCTTCTTCAGGATCATCTAAGAGAGCTCGGGCAATTAATAATGGAACGCAGATAGTGTCATGCTTAGTGGATGGGTGCAATTCAGATCTTAGTAATTGTAGGGACTATCACAAGCGCCATAAGGTCTGCGAACTCCATTCGAAGACACCGGTCGTTACAATTGGCGGCCACAAGCAAAGGTTTTGCCAACAGTGTAGCAGGTTCCATTCGCTGGAGGAATTTGATGAAGAGAAAAGAAGCTGCAGGAAACGTTTAGATGGACACAACCGACGGAGGAGAAAGCCGCAGCCAGAAGCCCTTGCGAGATCTGGTGGCTTTTTGTCCAATTACCAAGGCACGCACTTATTGCCCTTCTCAAGCTCACATGTATATCCTTCCACTGCTGTGGCTCACCCAGCTTGGAATGGAGCTGTCACATCCTGTGCAGAAGCTAGGCTCCACAACCACCACCAACACCAGCAAGTGCATCATTTGGTTGAAAAACAAGACCTGTTTCTGGGATCTGCATCCTATAAAGAAGGGAATAAGCAGCAGCTAGCATTCTTGCAAGGTGACCATTCCACAACAATGGAAAACAGCCAGAATAGCCAACCTCTACCACCTGCTTCTGTGTGTCAAACGTTTCTGAGGGCCACCCCTTTGTCGTCTCCACTTCACGACCACCACGACTCTCCTTGTGCTCTCTCTCTTCTGTCATCCCCACAGATGCACACAGGTGGGAATGGTTTAAGCCAAATGGTGCAGCCTCATCATCATCACTCCATGTCCCTTGTGCAGCAGCACCATCCCTTAGGCCTTAGCCTGCATGATCATAACCTGGAGTCGGTGGACCCAGTCTTGGTTCACAACGGGAGCGACCATTGTCCGGCTATGTATAACATGAATGAGGCCCCTCAACCATTTCCTTTTCATTGGGAATAG 1149 0.4813 MDWNMKAASWDLAELDEAAALPNIETIDGSSRLGVGTSKGEFSVDLKLGQVGNSCNEPSVAKWKDVGGVSKVMTSSSSSGSSKRARAINNGTQIVSCLVDGCNSDLSNCRDYHKRHKVCELHSKTPVVTIGGHKQRFCQQCSRFHSLEEFDEEKRSCRKRLDGHNRRRRKPQPEALARSGGFLSNYQGTHLLPFSSSHVYPSTAVAHPAWNGAVTSCAEARLHNHHQHQQVHHLVEKQDLFLGSASYKEGNKQQLAFLQGDHSTTMENSQNSQPLPPASVCQTFLRATPLSSPLHDHHDSPCALSLLSSPQMHTGGNGLSQMVQPHHHHSMSLVQQHHPLGLSLHDHNLESVDPVLVHNGSDHCPAMYNMNEAPQPFPFHWE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0585 382 Coils Coil 147 167 - -
Dere03g0585 382 Pfam SBP domain 97 170 IPR004333 GO:0003677
Dere03g0585 382 SUPERFAMILY SBT domain 95 176 IPR036893 GO:0003677|GO:0005634
Dere03g0585 382 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 364 IPR044817 GO:0003677
Dere03g0585 382 ProSiteProfiles Zinc finger SBP-type profile. 94 171 IPR004333 GO:0003677
Dere03g0585 382 FunFam Squamosa promoter-binding-like protein 14 88 158 - -
Dere03g0585 382 Gene3D - 88 158 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0585 Dere-ChrDere03 9895984 9898408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0585 1 382 SBP-box Gene Family AT5G50670 41.748 2.42e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere03g0585 SBP 9e-31 No_clan