Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0556 ATGGACAAGCTGAACTTTGTTAAAAATGGAGTGAGCAGATTGCCTCCCGGCTTTCGTTTCCAGCCAACAGACCAAGAGCTTGTGTTTCAGTACTTGAAATGCAAGATCTTCTCCCTCCCCTTGCCTGCTTCCATCATCCCTGACCTCAATCTCTGCAACTTCGATCCTTGGGATCTGCCAGGTAACTCTGATGAGGAAGAGAAGTACTTTTTCAGCTCAAAGGAAGCAAAATATCGAAATGGGAATCGCATGAACCGAACGACCATCTCGGGATACTGGAAGGCAACAGGATCAGACAAAAAAATTACATCCTCAACAAATAACGACGTCTTTGGGATAAGAAAAACCCTCGTTTTCTACGAAGGGACTTCCCCAAACAGATCAAACAAGACTGATTGGATCATGCACGAGTATCGCCTCGTCACTGCTTCGTCCAAGGCCAATGAGATAGGAGATTGGGTTCTGTGTCGGATATTCCTCAAGAAAAGAAGTGGAGACCAAAGTGATGATCAGACCAGGAGGAGCAGTCACGTGCAGAATGATAGGCAAGACATGGTGGCTCAACCAAGACTCTTTGATTTTATGATGCAGCAAAACACAAGCACACATTATTCTCCTACATCGTCGTCTTGTTCAAGTACCAATGGCTTTACTGAGGATGTACCAGATCATGAAGAAACAAAGAGAGAAAGGACAAAGGAAAGTGAAAAAGCCGGAACCTTTATTCCTCTCGGTTTCTCTGCTTCCTCTCCACTGAAATTGAAGATGATAGACTTTGCTCGCGTCCAGAAGGAGCTCGTTGAATGCAGCAAGGATGTTGAAGGTTCCGGCATCAGGGTCAACCTCAAAGGCGACAATCTTGCGCGTTTGATCGGAACCATTCCTGGCCCTCTTGGTACTCCTTACGAGGGAGGCATTTTCCAAATTGATATCACATTACCGGATGGATACCCTTTTGAACCTCCGAAAATGCAGTTTGCGACGAAAGTCTGGCACCCTAATATCAGCAGTCAGAGTGGAGCTATTTGCCTAGACATCTTGAAGGATCAATGGAGCCCTGCACTGACACTGAAGACAGCGCTGCTTTCTGTGCAAGCACTTCTCTCTGCTCCTCAACCTGATGATCCTCAAGATGCTGTTGTAGCACAACAGTATCTCAAAGACTACCAGACATTTGTTGGCACTGCTCGTTACTGGACTGAAACGTTTGCCAAGACATCATCTCTTGGGATTGAGGATAAGGTACAGAAACTCGTAGAGATGGGGTTTCCTGAAGCTCAAGTGAGGAGTGCTCTGGAAGCTGTTGGTGGCGATGAAAACTTAGCTCTCGAAAGGCTTTGCTCTTAG 1347 0.4618 MDKLNFVKNGVSRLPPGFRFQPTDQELVFQYLKCKIFSLPLPASIIPDLNLCNFDPWDLPGNSDEEEKYFFSSKEAKYRNGNRMNRTTISGYWKATGSDKKITSSTNNDVFGIRKTLVFYEGTSPNRSNKTDWIMHEYRLVTASSKANEIGDWVLCRIFLKKRSGDQSDDQTRRSSHVQNDRQDMVAQPRLFDFMMQQNTSTHYSPTSSSCSSTNGFTEDVPDHEETKRERTKESEKAGTFIPLGFSASSPLKLKMIDFARVQKELVECSKDVEGSGIRVNLKGDNLARLIGTIPGPLGTPYEGGIFQIDITLPDGYPFEPPKMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTFVGTARYWTETFAKTSSLGIEDKVQKLVEMGFPEAQVRSALEAVGGDENLALERLCS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0556 448 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 410 448 IPR015940 -
Dere03g0556 448 Pfam No apical meristem (NAM) protein 15 140 IPR003441 GO:0003677|GO:0006355
Dere03g0556 448 Gene3D NAC domain 23 165 IPR036093 GO:0003677|GO:0006355
Dere03g0556 448 CDD UBCc 261 400 IPR000608 -
Dere03g0556 448 SMART uba_6 411 448 IPR015940 -
Dere03g0556 448 SUPERFAMILY UBC-like 257 406 IPR016135 -
Dere03g0556 448 MobiDBLite consensus disorder prediction 219 236 - -
Dere03g0556 448 FunFam Ubiquitin-conjugating enzyme E2 27 411 447 - -
Dere03g0556 448 Pfam UBA/TS-N domain 412 446 IPR015940 -
Dere03g0556 448 Pfam Ubiquitin-conjugating enzyme 261 399 IPR000608 -
Dere03g0556 448 Gene3D - 405 448 - -
Dere03g0556 448 ProSiteProfiles NAC domain profile. 14 161 IPR003441 GO:0003677|GO:0006355
Dere03g0556 448 Gene3D Ubiquitin Conjugating Enzyme 255 404 IPR016135 -
Dere03g0556 448 SMART ubc_7 260 405 - -
Dere03g0556 448 MobiDBLite consensus disorder prediction 200 218 - -
Dere03g0556 448 FunFam ubiquitin-conjugating enzyme E2 27 256 407 - -
Dere03g0556 448 MobiDBLite consensus disorder prediction 200 236 - -
Dere03g0556 448 CDD UBA_II_E2_UBC27_like 412 447 IPR041974 -
Dere03g0556 448 SUPERFAMILY UBA-like 411 448 IPR009060 GO:0005515
Dere03g0556 448 SUPERFAMILY NAC domain 10 161 IPR036093 GO:0003677|GO:0006355
Dere03g0556 448 PANTHER NAC TRANSCRIPTION FACTOR 56 14 201 - -
Dere03g0556 448 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 331 347 IPR023313 -
Dere03g0556 448 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 257 405 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0556 Dere-ChrDere03 9534689 9539965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0556 1 201 NAC Transcription Factor Family AT5G13180 53.456 2.41e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere03g0556 UQ_con 1.7e-41 CL0208