Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0554 ATGGGTTGCGTGCTGGGAACGCCGGCGGATGGAGAAGGCCGCCGGTCGGATTCCGGAGCTCAGTATCACCGTCGTCGTGGTGGCCAACGAAACTCTTTCACTGATGGAGGTAATGCCGTTGTGGTTAGGAAGAAACGGGAGGCGAGGGAGAAGGAGAAGCAAGGGACTCGGCATACCGGCTACTTCCCGGGGACGGTTCCGGCGCCGGAGAGACGGAAACCTCGGCTTGATCCATACGCTAAAACCGAACAGGGTTGGCCATCCTGGTTGATGGATGTGGCCGGCGACGCAATCCGAGATTGGTCTCCTCGTCGTGCCAACACGTTTGAGAAGCTTGCTAAGATTGGGCAAGGGACTTACAGCAATGTTTATAAAGCTAGAGACCTTCTTACTGGAAAGATAGTGGCTCTAAAGAAAGTCAGGTTTGATAATTTGGAACCAGAGAGTGTGAAATTCATGGCAAGAGAAATTCTTATTTTGAGGCGGCTTGATCACCCCAATGTCTTAAAACTTGAAGGCTTGGTTACTTCACGCATGTCATGTAGTCTTTACTTAGTATTCGAGTATATGGAACACGATCTTGCTGGGCTTGTAGCTCGCCAAGATGTTAAGTTTACTGAGCCTCAGGTCAAATGCTATATGAAGCAATTACTCTCTGGCCTGGAGCATTGCCACAGTCGAGGTGTCTTGCACCGTGATATTAAGGGTTCCAATCTGCTTATTGACAATGAAGGAATCCTTAAAATTGCAGATTTTGGCCTAGCGACCTTCTATGATCCTGAGAAAAAGCAGCCCATGACAAGTAGAGTTGTCACACTTTGGTACCGGCCCCCTGAGCTTCTTCTTGGGGCAACACGCTATGGAGTTGGTGTTGACCTTTGGAGTGCTGGCTGCATCTTGGCAGAGTTGCTTGCTGGGAAGCCAGTCATGCCTGGCCGAACAGAGGTTGAGCAACTGCACAAAATATTTAAATTATGTGGCTCTCCGTCTGAGGACTATTGGAAGAAATACAGGTTGCCAAATGCTACACTCTTTAAGCCACAGCAGCCTTATAAACGTTGCCTTTCAGAAACTTTCAAGGATTTCCCTCCTCCTTCTTTACCTCTAATTGAAACTCTTCTTGCCATAGATCCAGATGATCGTGGGACTGCCTCAGCTGCACTATGTAGTGAATTCTTTACAACTGAGCCCTATGCTTGTGAACCATCGAGTATACCAAAGTATCCTCCCAGCAAAGAATTGGATGTAAAACTCAGAGATGAAGAAGCAAGAAGGCAAAAAGCTCAGAGTGGGAAAGCTAATGCAGTTGATGGTGTGAGAAGAGTCAGAATACGTGATCGTGGTAGGGCCATTCCAGCTCCAGATGCCAATGCAGAGATGCAAACAAACATAGATAAGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGCAAAAGTGAAAAATTTCCACCTCCTCATCAGGATGGAGCTGTTGGATATCCAATAGGTGCAACCCATAAAGGACCTGTTTCATTTGGTGCCACTGATGCTTCCTTTGGCTCAGCAATATTTAATTCAAAACCTTCAGGATCTGTTAGAAATCACGCTGCTGCAAGACCTTACAGAGGGAGGAAAACTAGTAAAGCTGACTCCCAGATGGTGTCCTCATGGAAACTTATGCGAGCCTTCAAGCCATCGACAATAGGCCCATCGATGAACATACTATTTAGGAGCAAATAA 1719 0.4695 MGCVLGTPADGEGRRSDSGAQYHRRRGGQRNSFTDGGNAVVVRKKREAREKEKQGTRHTGYFPGTVPAPERRKPRLDPYAKTEQGWPSWLMDVAGDAIRDWSPRRANTFEKLAKIGQGTYSNVYKARDLLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLVARQDVKFTEPQVKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFYDPEKKQPMTSRVVTLWYRPPELLLGATRYGVGVDLWSAGCILAELLAGKPVMPGRTEVEQLHKIFKLCGSPSEDYWKKYRLPNATLFKPQQPYKRCLSETFKDFPPPSLPLIETLLAIDPDDRGTASAALCSEFFTTEPYACEPSSIPKYPPSKELDVKLRDEEARRQKAQSGKANAVDGVRRVRIRDRGRAIPAPDANAEMQTNIDKWRVVTHANAKSKSEKFPPPHQDGAVGYPIGATHKGPVSFGATDASFGSAIFNSKPSGSVRNHAAARPYRGRKTSKADSQMVSSWKLMRAFKPSTIGPSMNILFRSK 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0554 572 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Dere03g0554 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Dere03g0554 572 PANTHER CELL DIVISION PROTEIN KINASE 107 397 - -
Dere03g0554 572 FunFam probable serine/threonine-protein kinase At1g54610 96 191 - -
Dere03g0554 572 SUPERFAMILY Protein kinase-like (PK-like) 103 398 IPR011009 -
Dere03g0554 572 Gene3D Transferase(Phosphotransferase) domain 1 192 433 - -
Dere03g0554 572 MobiDBLite consensus disorder prediction 40 57 - -
Dere03g0554 572 SMART serkin_6 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0554 572 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0554 572 CDD STKc_CDK9_like 109 393 - -
Dere03g0554 572 MobiDBLite consensus disorder prediction 521 543 - -
Dere03g0554 572 MobiDBLite consensus disorder prediction 1 74 - -
Dere03g0554 572 Gene3D Phosphorylase Kinase; domain 1 95 191 - -
Dere03g0554 572 MobiDBLite consensus disorder prediction 16 30 - -
Dere03g0554 572 FunFam probable serine/threonine-protein kinase At1g54610 192 433 - -
Dere03g0554 572 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0554 Dere-ChrDere03 9524332 9528010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0554 101 429 Core Cell Cycle Gene Families AT5G10270 51.136 1.13e-115 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Dere03g0554 Pkinase 2.4e-68 CL0016