Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0553 ATGGATGATGGCTGCCAACATGAAAATGGTAGGCATAAGATGGACTACTACAGAGGAGCACATTCCCCGTGGAATGTTGCTCCTCAACATCAAGTAAAGGAACCAAATGCCTTAGTTATGAATAAGAAAATTATGTCCATCATAGCTGAGAGGGAGGCTGCCATTCGAGAACGAAATGCAGCTTTGTCTGCAAAGAATGAAGCCTTGGCTGCCCGAGACGAGGCCCTTCGGCAGAGGGATGAAGCACTTCTTCAGAGGGATAATGCCTTAATGGAACGGGATAATGCCCTTGCCGCCCTTCAAATCCGCGATAATGCTGTCACCTTCCCATTGGGTAATGGAATTCATCGTGGGTCAAAGCGGATGCACCATTCCTCAAACCATCTAGTTGACATGGCTGAAGCTGCATATGGCTCAAAGGATATGACCACTACTGATGCCTTCCCAGTGACTGTTATAGATTCTGAAACTGTTAAATCTCATCAGGCCAAGAGAAAGAAGGATGACAAGGCAATTTCTTCTAAGGCATCAAGGCCCTCTAGCAAAGGAAAGAAAGTGGGTGAGGATCTAAATAGGTCAGCTACTTCTGAAGGAATAAAAATTAAATCTGAGTGGGATAGGCAGGATGTTGGCTTGAATTTGATTACTTTTGATGAAACTTCCATGCTAGCCCCAGTTTGCACATGTACTGGAGTACCTAGGCAGTGCTACAAATGGGGAAATGGTGGATGGCAGTCTTCTTGTTGTACCACCACCTTGTCAATGTATCCATTGCCACAGCTTCCAAACAAGCGTCATTCCCGAATTGGTGGGCGAAAGATGAGTGGAAGTGTCTTTACAAGACTGCTTAGTAGGGTAGCAGCAGAAGGCCAAGATTTATCTATACCATTGGATCTCAAGAACTACTGGGCCAGACATGGAACAAATCGCTACATCACTATCAAGTAG 948 0.4525 MDDGCQHENGRHKMDYYRGAHSPWNVAPQHQVKEPNALVMNKKIMSIIAEREAAIRERNAALSAKNEALAARDEALRQRDEALLQRDNALMERDNALAALQIRDNAVTFPLGNGIHRGSKRMHHSSNHLVDMAEAAYGSKDMTTTDAFPVTVIDSETVKSHQAKRKKDDKAISSKASRPSSKGKKVGEDLNRSATSEGIKIKSEWDRQDVGLNLITFDETSMLAPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSMYPLPQLPNKRHSRIGGRKMSGSVFTRLLSRVAAEGQDLSIPLDLKNYWARHGTNRYITIK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0553 315 PANTHER - 11 315 IPR010409 -
Dere03g0553 315 MobiDBLite consensus disorder prediction 158 193 - -
Dere03g0553 315 MobiDBLite consensus disorder prediction 158 191 - -
Dere03g0553 315 Coils Coil 65 92 - -
Dere03g0553 315 SMART GAGA_bind_2 1 315 IPR010409 -
Dere03g0553 315 Pfam GAGA binding protein-like family 1 315 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0553 Dere-ChrDere03 9521223 9522244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0553 1 315 BBR or BPC Transcription factor family AT2G21240 59.937 7.59e-134 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Dere03g0553 GAGA_bind 3e-98 No_clan