Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0552 ATGAAAGTATCGGAGAACGATCCTATTAATGTCTCTTTTCAGCTTCTTTCTTCTCTTCTGGATGAGATTCCTACTGTTGTTAACTTTAAAGGTAAATGGTCTCTGATCAGAGCCAAACTCACCGATCTTGAGACTCAGCTCACAGATTTCTCCTCTGAGTTTCCTAGTTACGCCTCCAATTCTCTGTCACTTGAGCTACTTCAGTCTATTTCGGACACCCTAAAAGATGCCGTTTCGCTTGCCAAAGACTGCCAGTCCCCTAGCTTATCCCAGGGCAAGCTTAAGACCCAGAGCGACATTGATTCGGTCCTCGCTAAGCTGGATCGCCATGTTAAGGACTGCGAGATTCTGTTCAGGAGTGGAGTTTTGCAAGACGGTGCCGTTTCGAGCGCGTCTAAGAGAGAGGCTGTAAGGTCTGAATCCAGGAATTTGATTACTCGTCTGCAAATCGGTTCTGCTGAGTCCAGGAAGTCAGCGATGGACTCGTTGTTGGGCTTACTCGAAGAGGATGATAAGAATGTGATGATAGCTGTTGCACAGGGTGTGGTTCCGGTGCTCGTCCGCTTACTGGATTCGGCCTCTGCCGAGATGAAGGAGAAGACTGTTGTTGCTATCTCCAGAATTTCCATGGTGGATAGTAGCAAGCATGTTCTGATTGCTGAGGGTTTGTTGCTTTTGAATCAATTGGTTCGAGTTCTTGATTCGGGTAGTGGGTTTGCCAAACAGAAATCTTGCATAGCCCTCCGGGCTCTAAGCTTCTCCAAAGAGAATGCTAGGGCAATCGGATCTAGAGGTGGAATCTCATCACTGTTGGAGATTTGTCAAGCAGGCACGCCTGGTTCCCAAGCGTCGGCAGCAGGGGTTTTGAGAAATCTTTCAGTCTTCGCTGAAATTAAGGAAAATTTTATCGAGGAAAATACGATTGTTGTTCTATTGGGGCTCGCCTCTTCGGGAACTGCGTTAGCGCAAGAAAATGCAATTGGGTGTTTGTCTAATTTAATTTCTGACGACGAAAGTTTGAAACTTTTGTTTGTAAAGGAAGGAGGAATTGAGTGTTTGAAGAATTTCTGGGACTCAGCTCCAATAATTCGGAGTCTTGAAGTCGCAGTAGAGTTGTTGAGTCACCTGGCTTGTAGTTCACCAATTGCTGAAGTTCTTGTTTCTGATGGGTTTATACCTCGCCTTGTGGGTGTGTTAAATTGTGGATTACTGGGGGTGAGAACTGCAGCGGCTCGAGCTGTTTATGCTTTGGGGTTGAACAGCACAAAGACGAGGAAAGAGATGGGTGAATGTGGATGCATTACCCCATTGATCAAGATGTTGGATGGTAAAGCTGTTGAAGAGAAAGAAGCAGCTGCAAAAGCGTTGTCAGTGCTCGCGTTGTGTGCGGGCAATAGAAAAATTTTCCGAAAGGATGAGAGGGGTATAGTGAGTGCGGTTCAGCTGTTGGATCCATCGATACAAAATTTGGACAAGAAATACCCTGTTTCTGTGCTGACCTCGCTTGTGCATTCGAAAAAATGTAGGAAACAAATGGTAGCGGCCGGTGCTTGTGTACATACGCAAAAACTAGTTGAGATGGATGTTGAGGGGGCTAAGAAACTCTTGGATAGCCTTGGTAATGGTAAGATATGGGGAGTTTTTGCGAGACCCTAG 1656 0.4589 MKVSENDPINVSFQLLSSLLDEIPTVVNFKGKWSLIRAKLTDLETQLTDFSSEFPSYASNSLSLELLQSISDTLKDAVSLAKDCQSPSLSQGKLKTQSDIDSVLAKLDRHVKDCEILFRSGVLQDGAVSSASKREAVRSESRNLITRLQIGSAESRKSAMDSLLGLLEEDDKNVMIAVAQGVVPVLVRLLDSASAEMKEKTVVAISRISMVDSSKHVLIAEGLLLLNQLVRVLDSGSGFAKQKSCIALRALSFSKENARAIGSRGGISSLLEICQAGTPGSQASAAGVLRNLSVFAEIKENFIEENTIVVLLGLASSGTALAQENAIGCLSNLISDDESLKLLFVKEGGIECLKNFWDSAPIIRSLEVAVELLSHLACSSPIAEVLVSDGFIPRLVGVLNCGLLGVRTAAARAVYALGLNSTKTRKEMGECGCITPLIKMLDGKAVEEKEAAAKALSVLALCAGNRKIFRKDERGIVSAVQLLDPSIQNLDKKYPVSVLTSLVHSKKCRKQMVAAGACVHTQKLVEMDVEGAKKLLDSLGNGKIWGVFARP 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0552 551 Gene3D - 363 528 IPR011989 -
Dere03g0552 551 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 5 549 - -
Dere03g0552 551 Gene3D - 89 362 IPR011989 -
Dere03g0552 551 SMART arm_5 336 378 IPR000225 GO:0005515
Dere03g0552 551 SMART arm_5 170 210 IPR000225 GO:0005515
Dere03g0552 551 SMART arm_5 421 461 IPR000225 GO:0005515
Dere03g0552 551 SMART arm_5 254 294 IPR000225 GO:0005515
Dere03g0552 551 SMART arm_5 379 419 IPR000225 GO:0005515
Dere03g0552 551 SMART arm_5 295 335 IPR000225 GO:0005515
Dere03g0552 551 Pfam Armadillo/beta-catenin-like repeat 170 209 IPR000225 GO:0005515
Dere03g0552 551 SUPERFAMILY ARM repeat 143 489 IPR016024 -
Dere03g0552 551 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 181 223 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0552 Dere-ChrDere03 9503410 9505065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0552 127 410 U-box Gene Family AT2G23140 26.573 1.49e-16 80.9