Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0547 ATGGAAGCTTTCTCAAATCACCAGTACCACCATCCTTTTCTCCTTCACTCTTCGCCATCAGTGTTGTCAGCTTTCGGAGAGCAACCTCTTATAAATACTACTCCTACTCATCAGTTTCCTCTAATTCACGAGACTACTTCAAACCTTGCGAATCACGACGCTAGCTGTGCTGATAATCAGAGCTGCAAGATGACTCTCAGTGATAATGAGCCGTCTGTGGCCAAAGCCCACACTCCTGAGACCTCCATGGTGGTGGATAAGCTTGAAAATGGCGAGCACGTCACTCGGAAGGAGAAGAAGAGGAGATACTGCAGAAATGGGTCTTCCTTGAGATTTTCTCCTGATAAGGAAGCTACAGAAGGAAGAAACAAGAAACAGAAGAAGAGAATTAATGGTGTGGCGAAAGAAGAGGAAAATCCAAAAGCAGAAGAGAAGAAGGAACAGAAGAAAATTCCAGAAGTGCCCCCAACCGGCTATATCCATGTCAGAGCAAGAAGGGGTCAAGCAACGGATAGCCACAGCCTCGCCGAAAGGGTAAGAAGAGAGAAAATAAGCGAGAGGATGAAGATGTTGCAGGGACTTGTGCCAGGTTGTGACAAGGTAACTGGAAAAGCGCTCGTGTTAGACCAAATCATCAATTATGTTCAGTCCCTTCAGAATCAAGTGGAGATCTTGTCAATGAGGCTCGCTTCTGTGAATCCCATGTTCTGTGACTTCACAATGGGTTTAGATACTCTCATGGGTAGACCAGAGAGATTAAATAGCTTGGAATCCCCTCTACCATCTTTACCACAATGCAGCACCAACCGGGCAATAAATTTTGCTGATGATTATCTTTTGGATAATTCAGCTTCGGTTTTTCTTCAAGGACAAGGGTCAAATGTCTTCTCCTCCCAGGATGCTGGTAGTCATTTCTGGGATGCAGATGACCAACGACAAATGTCTCCTAATCCTTGTGGCGTCAGCAACAACTTATGTTCCTTTCAATGTTAA 993 0.4481 MEAFSNHQYHHPFLLHSSPSVLSAFGEQPLINTTPTHQFPLIHETTSNLANHDASCADNQSCKMTLSDNEPSVAKAHTPETSMVVDKLENGEHVTRKEKKRRYCRNGSSLRFSPDKEATEGRNKKQKKRINGVAKEEENPKAEEKKEQKKIPEVPPTGYIHVRARRGQATDSHSLAERVRREKISERMKMLQGLVPGCDKVTGKALVLDQIINYVQSLQNQVEILSMRLASVNPMFCDFTMGLDTLMGRPERLNSLESPLPSLPQCSTNRAINFADDYLLDNSASVFLQGQGSNVFSSQDAGSHFWDADDQRQMSPNPCGVSNNLCSFQC 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0547 330 FunFam Basic helix-loop-helix transcription factor 165 237 - -
Dere03g0547 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 234 IPR036638 GO:0046983
Dere03g0547 330 Gene3D - 165 236 IPR036638 GO:0046983
Dere03g0547 330 MobiDBLite consensus disorder prediction 89 151 - -
Dere03g0547 330 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 58 270 IPR024097 GO:0006355
Dere03g0547 330 Pfam Helix-loop-helix DNA-binding domain 172 219 IPR011598 GO:0046983
Dere03g0547 330 CDD bHLH_AtBPE_like 158 234 - -
Dere03g0547 330 MobiDBLite consensus disorder prediction 115 151 - -
Dere03g0547 330 SMART finulus 174 224 IPR011598 GO:0046983
Dere03g0547 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 218 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0547 Dere-ChrDere03 9447454 9449119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0547 85 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 51.075 6.51e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere03g0547 HLH 2.1e-06 No_clan