Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0540 ATGAACTGGCCGACATGGTGGAAATGGAAGGCCTTGGCAATGGCCTTTGTAGTGTTGTTTCAAATGGGTTTTTGCTTGGAGGTTCTCTCTGCTTATGGAGATATGATTCTCCGGCTTCCTGGCCAACCCCAAGTTCGCTTCCAACAGTTCTCAGGATACGTTGAAGTCGACGACAAGAATCAGAAAGCGCTGTTCTACTATTTTGTTGAATCGGAAACCGATCCTGCTTCGAAGCCTCTGGTTCTCTGGCTCAATGGAGGACCCGGTTGTTCTTCTTTGGGAGTAGGTGCATTCTCTGAAAATGGACCTTTCAGACCAAATGGGGAAGTCCTGACTGAAAATAAGTATAGTTGGAACAGAGAGGCAAACATATTGTATTTGGAGACACCAGTTGGAGTGGGTTTCTCTTACGCTAAAGGTAGCTCCTCCCAGTTGACAGTAAATGACGAGGCAACAGCCAGGGACAACCTTGTATTCCTGAAACGCTGGTTCAACAAGTTCCCCCAATACAGGCACAGAGACTTGTTTTTGACAGGGGAAAGTTATGCAGGGCATTATGTTCCTCAACTTGCAAAGCTCATGATTGAAACCAACAAAAAAAAGAAGATATTCAATCTTAAAGGCATAGCCTTAGGTAATCCGCTTTTAGAATATGCCACGGACTTCAATTCAAGGGCTGAGTTCTTCTGGTCTCATGGATTGATATCAGATTCAACGTACAAAATGTTCACTACAGTGTGTAATTATTCTCGGTACGTTAGTGAATACTATAGAGACTCAGTTTCGCCTCTTTGTTCAAAGGTTATGCGCCAAGTAGGCAGAGAAACCAGTAAATTTGTGGACAAGTACGATGTTACCCTTGATGTTTGCATATCATCAGTGCTTTCACAATCCAAGGTTATTTGTCCTCAAACCCAACAAGCCAACGAGATGGTAGATGTGTGTGTAGATGACAAAGTTACAAATTACTTAAACCGAAAAGATGTACGCGAGGCTCTTCATGCCAGGCTTGTCGGTGTTCGCAAGTGGGATGTCTGCAGCAACATTCTAGACTATGATATGCTCAACCTGGAAGTGCCTACCCTCCCTGTCATTGGATCACTAATAAATGCAGGTGTTCGGGTCTTAATTTACAGTGGAGATCAAGATTCTGTTCTTCCTCTCACTGGTAGCCGCACCTTGGTTCAAAAACTGGCAAGGCGATTAGAATTGAATACAACAGTACCTTACAGAGTATGGTTTGCAGGCCAGCAGGTTGGTGGGTGGACTCAAGTTCATGATGATATCCTCTCATTTGCCACCGTCAGAGGTGCCTCCCATGAAGTTCCTTTCTCGCAGCCTGAGAGATCGCTTGTCCTATTCAAAGCATTCTTGGAAGGGACGCCTCTACCTGATAGAATCTTGACTCAAAGTTAG 1416 0.4442 MNWPTWWKWKALAMAFVVLFQMGFCLEVLSAYGDMILRLPGQPQVRFQQFSGYVEVDDKNQKALFYYFVESETDPASKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEVLTENKYSWNREANILYLETPVGVGFSYAKGSSSQLTVNDEATARDNLVFLKRWFNKFPQYRHRDLFLTGESYAGHYVPQLAKLMIETNKKKKIFNLKGIALGNPLLEYATDFNSRAEFFWSHGLISDSTYKMFTTVCNYSRYVSEYYRDSVSPLCSKVMRQVGRETSKFVDKYDVTLDVCISSVLSQSKVICPQTQQANEMVDVCVDDKVTNYLNRKDVREALHARLVGVRKWDVCSNILDYDMLNLEVPTLPVIGSLINAGVRVLIYSGDQDSVLPLTGSRTLVQKLARRLELNTTVPYRVWFAGQQVGGWTQVHDDILSFATVRGASHEVPFSQPERSLVLFKAFLEGTPLPDRILTQS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0540 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Dere03g0540 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185|GO:0006508
Dere03g0540 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185|GO:0006508
Dere03g0540 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Dere03g0540 471 FunFam Carboxypeptidase 29 464 - -
Dere03g0540 471 ProSitePatterns Serine carboxypeptidases, histidine active site. 430 447 IPR033124 GO:0004185
Dere03g0540 471 ProSitePatterns Serine carboxypeptidases, serine active site. 177 184 IPR018202 GO:0004185
Dere03g0540 471 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 447 IPR001563 GO:0004185|GO:0006508
Dere03g0540 471 FunFam Carboxypeptidase 361 460 - -
Dere03g0540 471 Gene3D alpha/beta hydrolase 35 466 IPR029058 -
Dere03g0540 471 SUPERFAMILY alpha/beta-Hydrolases 38 464 IPR029058 -
Dere03g0540 471 Pfam Serine carboxypeptidase 40 460 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0540 Dere-ChrDere03 9373138 9376459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0540 323 463 Calmodulin-binding Proteins AT2G22960 29.577 1.37e-15 73.2