Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0539 ATGGCAAAGCGGCAAAACCACGACCCTGCTATCATCAACCCTCTTCAACGCCAGGGCAAAGACGAAGATAGGGAATTGGAGCTCAGATCCGACGAGCCTGAGGCCCCATTGCCTCTCACAGCTACTTCCCGGGTCTTGTATATGTTGGGAGATATCGCGGCAGGGCCTGCGTTTAGGTTCACGCAATGGCTCGAATCGGTTCGTAAACGCACAACGAAAAACCGCTCCTCGGGCTTCCCCCACCGTCTTCCGAGGCTCAACGATACTATGCCTTCTAGTGTGGGAGAATCAACGGAGCATGCAAAATGCGATCCACCTCCTGTGCAAACTACAGAAGTTAGTTTGTGGGAAAGGCTTGGTAATGCTGCTATGTTGGACATTGAATCTAGCTCATTTTCTTGGGAGAGGCTCTCCTCACTACACCACACTGAACACAGCAGCAGCAATGAACATTCAGAGGATGAAATGAACAAAGCTCTTGAGGTAACTGTAAATTCTGGTGGAGTTGTCTTCTTTGCCTTTTTTAATCGCCTTGGGAGTGATGATACTTTCCCGAAGGAGGAAGCTGCTGTTATTAAAATATCATCATCAAGAATGGCAACGCAATCTGAACGCCTTGGTTATGAATTTGCCAAGTGGTTGGGAGTCCAAACTCCTCAGGCTAGAGTCATTCACAATACCAGTCCAGAGTGGCTCCAAATAAAGGAAGCAGCAGAAAAAGCTAGAAAAACAGCATTTTGTGAAGGAGATGAAATTGGTGAAATGACCTGTTTAGAACTTCTGGAAGCACTTGAGCTTAGTAAGTGCCTCTATTTCATGAGTTATATACATGGGTCCCCTTTACTTGAAAATTCCAGTGCATTTGAATCACTGGAATCTGCTGAAAGAACAGCAGCAGCTCTTGGCCGGGTATTGATGCTAGACCTTGTCATCAGAAATGAAGATAGGCTCCCTTGCCGTCACCTTAGATGGCGTGGGAATTCTGCGAATTTATTGTTGGCTGAAAAGATGATCTCTGCAACTACCAGCTCACTAGAAAAAGCTTTTGATTCTGCAATAAATCAATATAGACCAAAGGTGATAAGAGCACTCCAAAAAGAAAGAAGGTCAACTTCAGTAAGTGTCAGATTGTGTTCTAATAATCCTGGATTGTTATCACAGGCCTCTGATGCCTCAGATATCTCAGAATCACCAAGATCCTGTGACATGAACCTTAAAGGTCAAACATCAGGTGAACCACAGTGTACTGACATTGTGGCTATTGATTCTGGTGTTCCCCGCCGACCCCCTGCTGGTAAACGTGCAGATGATCAGGCTAATTATCCTAAGTTGGTTGAGTTGCTACTCAATAGTTCTGATTTTTGCTCTAACCTGTTACATGATATAACTGGAGGAAAATTAGGATCTCCTTTACTTAGAGAAATGCATACAACTACTGATATACATGCAAGCAACATGGCATCAGTAGTGCATGAGTTCCGTAGTGGTTTCCGTGCTGCTCTTATGGATCTGCAGGGATTTCATATATTCCTACTCACACTTCACCAAAAACTTGACAGCTTATTACGGTCATTTATGAACATTATAAGTAAAATATCATCAGGGGAGTCTGACAAAGAGGATTCAATGATTCTTGACTCACCTTCACAGGCTGTTGGAGATGGTATCTTTCCATCGCCAACAAGCAAGGATAGGTCTTTTAATGAATACCATCCAGATTCTGGTGATTCAGAATCACAGAGAACTGCTCCAAGAGCATCATTGTCAGGGAACAGAGAAAGCTCTGACATTGCATCTCCTATCTCAAGGGAAAGTTGGCATGGGAAGTTCTATAAAGGAAGTGGAGAGCCACTTCGTAGTCTTCGCTTGACAGCAAAGCTACGTGACTTCCATAAATATGCCAAGGTGGATGCAGAATCTAGTAAAGACTTGGAACAGTGGAATGAAACACTTAAAAGTGATGCCATCAAACTATGTCAAGACAACAATTTCAATACAGGATTTTTTGAATGTGGTGATAGTAATGGTGTTGTTGATGCATATGAACTGAAGGTCAGACTTGAGCATATTCTTGAAAGGATTGCATTAATCTCTGAGGCTGCAAATACAGAGAAGCCATCTGCTGTGACAAATAGTCTGTTCATTGGTGGAGCACTGGCTGCAAGATCTGTATACACACTGCAGCACTTGGGAATCACACATATTCTTTGTTTGTGTGCCAATGAAATTGGACAGTCCGATTCTCAGTTTCCAGATCTATTTGAATACAAAAATTTCTATGTTTGTGACGATGTAGATTCCAACATAAGCAGCATATTTGAAGAAGCTTGTGATTTTATAGATTATGTTGAACAGAAAGGTCAGAGAATTTTAGTTCATTGCTTTGAAGGGAGAAGCAGAAGCGTCACATTGGTCCTTGCTTACTTAATGCTCAAGAAGAACTTCACTCTATTAGAAGCATGGAACGCTCTGAAACGAGTTCATCGTCGAGCACAACCAAATGATGGTTTTGCAAAGATCTTACAGGAACTGGATCAGGAACTGCATGGAAAGGTTTCCATGGAGTGGCAGCAAAGGAAACCTGCAATGAAAGTCTGTCCAATCTGTGGGAAAAATGCCGGACTAAGTAGCAGCTCCCTTAAGCTCCATCTACAGAAATCCCATAAAAAACTCTCATCAGGGAGCGTAGACAGTGCCATGACGATGGAGATCCAGAAGGCTTTAACAGCCTTGAAAATTAGTCGTGGTGGGAGTGTCAGTCCCACGCAGAGGCAGCCTAATTCAATAATGGATGTATGA 2799 0.4305 MAKRQNHDPAIINPLQRQGKDEDRELELRSDEPEAPLPLTATSRVLYMLGDIAAGPAFRFTQWLESVRKRTTKNRSSGFPHRLPRLNDTMPSSVGESTEHAKCDPPPVQTTEVSLWERLGNAAMLDIESSSFSWERLSSLHHTEHSSSNEHSEDEMNKALEVTVNSGGVVFFAFFNRLGSDDTFPKEEAAVIKISSSRMATQSERLGYEFAKWLGVQTPQARVIHNTSPEWLQIKEAAEKARKTAFCEGDEIGEMTCLELLEALELSKCLYFMSYIHGSPLLENSSAFESLESAERTAAALGRVLMLDLVIRNEDRLPCRHLRWRGNSANLLLAEKMISATTSSLEKAFDSAINQYRPKVIRALQKERRSTSVSVRLCSNNPGLLSQASDASDISESPRSCDMNLKGQTSGEPQCTDIVAIDSGVPRRPPAGKRADDQANYPKLVELLLNSSDFCSNLLHDITGGKLGSPLLREMHTTTDIHASNMASVVHEFRSGFRAALMDLQGFHIFLLTLHQKLDSLLRSFMNIISKISSGESDKEDSMILDSPSQAVGDGIFPSPTSKDRSFNEYHPDSGDSESQRTAPRASLSGNRESSDIASPISRESWHGKFYKGSGEPLRSLRLTAKLRDFHKYAKVDAESSKDLEQWNETLKSDAIKLCQDNNFNTGFFECGDSNGVVDAYELKVRLEHILERIALISEAANTEKPSAVTNSLFIGGALAARSVYTLQHLGITHILCLCANEIGQSDSQFPDLFEYKNFYVCDDVDSNISSIFEEACDFIDYVEQKGQRILVHCFEGRSRSVTLVLAYLMLKKNFTLLEAWNALKRVHRRAQPNDGFAKILQELDQELHGKVSMEWQQRKPAMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALKISRGGSVSPTQRQPNSIMDV 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0539 932 MobiDBLite consensus disorder prediction 74 108 - -
Dere03g0539 932 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 763 826 IPR000387 GO:0016311|GO:0016791
Dere03g0539 932 Pfam Actin-fragmin kinase, catalytic 112 371 IPR015275 -
Dere03g0539 932 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 705 850 IPR029021 -
Dere03g0539 932 MobiDBLite consensus disorder prediction 538 598 - -
Dere03g0539 932 Gene3D Protein tyrosine phosphatase superfamily 688 860 IPR029021 -
Dere03g0539 932 MobiDBLite consensus disorder prediction 579 598 - -
Dere03g0539 932 CDD DSP 706 843 - -
Dere03g0539 932 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 23 930 IPR035010 GO:0004721|GO:0009737|GO:0043622
Dere03g0539 932 Pfam Dual specificity phosphatase, catalytic domain 719 845 IPR000340 GO:0008138|GO:0016311
Dere03g0539 932 SMART dsp_5 705 847 IPR020422 GO:0006470|GO:0008138
Dere03g0539 932 SUPERFAMILY Protein kinase-like (PK-like) 69 438 IPR011009 -
Dere03g0539 932 MobiDBLite consensus disorder prediction 17 32 - -
Dere03g0539 932 FunFam Dual specificity protein phosphatase PHS1 677 851 - -
Dere03g0539 932 ProSiteProfiles Dual specificity protein phosphatase domain profile. 705 850 IPR020422 GO:0006470|GO:0008138
Dere03g0539 932 MobiDBLite consensus disorder prediction 1 35 - -
Dere03g0539 932 Gene3D - 281 532 IPR036940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0539 Dere-ChrDere03 9361667 9369624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0539 18 916 Protein tyrosine phosphatase (PTP) family AT5G23720 65.749 0.0 1151