Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0537 ATGATGTCCAGAGTAAACGGCGTCGCTTGGATGGATGAGAATAGAGAAGATGACCACTCTACTACTCCATCTTCATGGGCCAACGCTACCAACATTAGCAACATCAGTATCGAGAAAAACCAAAACCAGGGCCATTCTGGTTTTGTTGTAAACAAGGACGAGATGGGTTCTCTGTGTGCGCTTAAACCCATGCTTGAAATCGATGAGGATTGGTATATGGCGAACAATAGTATCCAAAATCACCCAGATATTATCAGAGACATCTCTTTCCCTCCGAACTTCGCTGACCCGGATAGTCTACTGCTGAACCCAGTGGACTCTTCCTCTTCATGCTCCCCATCTTCCTCTGTCTTCAACAATCTCGACCCATCTCAGGTTCCGTACTTTCTTCCTCCCAAACCCACCTTGTCTTCTCTTCTCAATGTCGTCCCTAGTAACAGTCCTTTAGATCATGGCTTTGATATGAGTTGCGAGGTCGGGTTTCTTGAGCCTCAAGCTTCCAGTTCTAGTCTATTGCGAGGCTTCACTGATTTCAGCTCCAACAACAACCAGATAACCCTTCCTAATTTATGCTCGGATCTGCAAATACCAGCATCAGGTATGCCCCGAGTACCTGAAAGCAGTTTTGTGGGTTTTCGGAGTTTCGAGGAAGGTTCTGGAAAATCGTTGTTCCTAAATAGACCCAAGATTTTGAGACCCCTTGAATCGCTGCCTCCATCGGGAGCACAACCCACTTTGTTTCAGAAGAGAGTGGCTTTTCGAAAAAAGCTAGCGAATAATGATATTGAAAGAGATAAAGGGAAGAGTGAAGTAGGGGAAGCGAATGAGAAGAAGGGGAAGATGGGTAGTTGGGAAGACGGGGAAGATGCTAGTTTTGATGGTTCAGGATTGAATTACGATTCGGATGAGTTGACTGAGAATAACAGAACAGAGGAGAATGCGAAGAATGGAGGAAACAGCTCGAATGCCAACAGTTCGGTGACTGGTGGTGATGGGGATAAGAAAGGGAAGAAGAAGGGAATGCCTGCGAAGAATTTGATGGCTGAACGACGTCGTAGGAAGAAGCTCAATGACAGACTGTATATGCTGAGGTCCGTTGTTCCGAAGATTAGCAAAATGGACAGGGCTTCAATCCTTGGGGATGCAATTGAGTACCTGAAGGAACTTCTGCAAAGGATCAATGACCTTCATAACGAATTGGAGTCAACACCTGCTGGCTCATCACTGAGTACTCCTGTCTCCAGTTTTCATCCTCTGACACCTACCTTACCCAGCCGTATAAAGGACGAATTTTGCCCCAGCTCATTGCCAAGCCCTAATGGCCAACCTGCAAGGATTGAAGTTCGGTTGCGCGAAGGAAAAGCTGTGAATATCCACATGTTTTGTGGTCGCAAGCCTGGTCTCTTGCTTTCAACCATGAGGGCTTTGGACAACCTCGGGTTAGACGTCCAGCAGGCTGTTATTAGCTGTTTCAATGGATTTGCTATGGATATCTTTCGAGCTGAGCAATGCAAGGAAGGTCAAGATATTCACCCGGAGCAAATCAAAGCAGTACTATTGGATTCAGCTGGCTTCCACAGCACGATCTAG 1590 0.4635 MMSRVNGVAWMDENREDDHSTTPSSWANATNISNISIEKNQNQGHSGFVVNKDEMGSLCALKPMLEIDEDWYMANNSIQNHPDIIRDISFPPNFADPDSLLLNPVDSSSSCSPSSSVFNNLDPSQVPYFLPPKPTLSSLLNVVPSNSPLDHGFDMSCEVGFLEPQASSSSLLRGFTDFSSNNNQITLPNLCSDLQIPASGMPRVPESSFVGFRSFEEGSGKSLFLNRPKILRPLESLPPSGAQPTLFQKRVAFRKKLANNDIERDKGKSEVGEANEKKGKMGSWEDGEDASFDGSGLNYDSDELTENNRTEENAKNGGNSSNANSSVTGGDGDKKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPAGSSLSTPVSSFHPLTPTLPSRIKDEFCPSSLPSPNGQPARIEVRLREGKAVNIHMFCGRKPGLLLSTMRALDNLGLDVQQAVISCFNGFAMDIFRAEQCKEGQDIHPEQIKAVLLDSAGFHSTI 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0537 529 MobiDBLite consensus disorder prediction 263 287 - -
Dere03g0537 529 Pfam Helix-loop-helix DNA-binding domain 347 389 IPR011598 GO:0046983
Dere03g0537 529 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 413 IPR036638 GO:0046983
Dere03g0537 529 SMART finulus 346 395 IPR011598 GO:0046983
Dere03g0537 529 FunFam BHLH transcription factor 336 404 - -
Dere03g0537 529 MobiDBLite consensus disorder prediction 311 329 - -
Dere03g0537 529 Coils Coil 379 403 - -
Dere03g0537 529 MobiDBLite consensus disorder prediction 1 26 - -
Dere03g0537 529 Gene3D - 333 404 IPR036638 GO:0046983
Dere03g0537 529 CDD bHLH_AtAMS_like 343 412 - -
Dere03g0537 529 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 340 389 IPR011598 GO:0046983
Dere03g0537 529 MobiDBLite consensus disorder prediction 331 353 - -
Dere03g0537 529 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 222 526 - -
Dere03g0537 529 MobiDBLite consensus disorder prediction 263 353 - -
Dere03g0537 529 CDD ACT_UUR-ACR-like 458 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0537 Dere-ChrDere03 9321438 9324965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0537 61 502 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 49.790 3.14e-120 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere03g0537 HLH 2e-09 No_clan