Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0535 ATGGCATCATCAGAGGTATCAATCAAGGGAAATTGTGTGAACGGGAAGGTGGAAAGCTACTCTTCTGGTTATAACAACCATAACGATGCTAGGAACGGTACAGAGGGTCAAAATGCTCATTCATCAACCCGGAAAGATGCAGAAGCTGCGCTTTACAGAGAGCTATGGCATGCCTGTGCTGGTCCCCTTGTCACAGTGCCCCGTGAAGGAGAGCGGGTCTTCTATTTTCCTCAGGGACATATCGAGCAGGTTGAGGCGTCCACGAATCAGGTGGCGGACCAGCATATGCCTTCGTACAATCTCCCTTCCAAAATCCTTTGTCGGGTAATCAACGTGATGCTGAAGGCCGAACCCGACACCGACGAGGTGTTTGCCCAGGTGACCTTGGTTCCTGAGACCGATCAAGATGAAAACGCCGTGGAGAAAGAGCCTCCACCACCTCCACCACCTCGATTTCACGTGCATTCGTTCTGTAAAACTCTGACGGCCTCTGATACGAGTACCCACGGTGGGTTCTCGGTTCTGAGACGGCATGCTGACGAATGCCTTCCTCCTCTGGACATGTCTAAGCAGCCACCTACCCAGGAGTTGGTAGCGAAGGATTTGCATGGCAATGAGTGGCGATTTAGGCATATCTTTCGCGGTCAACCGCGTAGGCACTTACTGCAAAGTGGTTGGAGTGTTTTTGTCAGTGCCAAGAGGCTTGTTGCAGGGGATGCATTCATATTTCTGAGGGGGGAGAATGGGGAACTTCGTGTCGGTGTCAGGCGCGCAATGAGACAGCAGGGCAATGTTCCATCCTCGGTGATCTCCAGTCATAGCATGCATCTTGGTGTCCTTGCCACTGCTTGGCATGCCATCTCGACCGGTACCATGTTCACTGTTTATTACAAGCCTAGGACGAGTCCTGCTGAATTTATTGTTCCATATGATCAATATATGGAGTCTCTCAAAAATAACTACACCATCGGAATGCGGTTCAAAATGAGGTTTGAAGGTGAGGAGGCTCCAGAGCAAAGGTTTAGTGGTACCATTGTTGGAATTGAAGATGCTGTACCCAACAGGTGGTCAGACTCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACATACCTCGTCCTGACAGAGTTTCTCCTTGGAAAATAGAGCCAGCTCTTGCTCCTCCAGCTTTGAATCCTCTTCCAATGCCCAGGCCTAAAAGGCCTCGTTCCAATGTGTTTCCATCATCTCCTGATTCCCCTGTTCTTACTCGTGAAGCCTCATCTAAAGTAAGTATAGACCCTTCTCCAGCAAGTGGGTTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGGGGCAATTTTGCAGAAAGCAACAAGTCTGTTACTGCAGAGAAGTCTGTTGCCTGGCCACCTGCAGTGGATGATGAAAAGATTGATGTGGTTTCTATCTCTAGAAGGTATGGGTCAGAGAACTGGATGTCAATGGGGAGGCATGAGCCAACATATTCTGATCTACTATCCGGCTTTGGAGCCAATGGAGATTCTTTTCGTTCACCCTTGGTTGATCAGACTGGCCCTCTGGCTAGTCCTGCCAGAAAGCATTCATTGGACCAGGAAGGAAAATTTAATGTGCTACCCAGTCCATGGCCTGTAATGCCCTCTAATCTTTCACTTAACCTCTTGGACTCGAATACAAAGGGTTCTGCACATGGTGGTGATGTAACTTATCAAACCCCAGGGAATGTGAGGTATGGTGCATTTGGTGACTACCCTGTTCTCCATGGACATAAAGTGCACCATTTACATGGAAATTTGTTGATGCCACCACCACCTACAACTCATTATGAGAGTCCCCGTTCAAGGGAACTGATGCCCAAACCAGTATCAGTGCAAATAAGCGAGGCTGTCAAACCAAAAGATGGTGGGGACTGTAAGCTCTTTGGCTTCTCACTTATCAGTAGCCCCATTACACAAGAGCAGTCTGTATCACAAAGAAATGTGAACAATGAGTCACCTGGTCACATGCATCTTCAATCTTACCAATCTCATGCCGTTGAAAGTGATCAGAAGTCGGAACAAGCAAGGGGCCCAAAACCAGCTGATGTTCTAGTTACTGTTGATGACCAAGAGAAGTCATTACAAGCTTCTCAGACGCATCTGACAGATGTTCATGCCAAACCACTCAGTGGTTCTGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGAATTGCACTTGGTAGGTCAGTGGACCTCACAAAATTCAGCAACTACGATGAATTAGTTGCTGAATTGGACCAGCTGTTTGAATTTGGTGGTGAGTTGGTGTCTCCCAAGAAGGATTGGCTTATTGTCTATACTGATAATGAGGGTGACATGATGCTTGTTGGGGATGATCCGTGGCAGGAGTTCTGTGCCATGGTACGCTAA 2424 0.4794 MASSEVSIKGNCVNGKVESYSSGYNNHNDARNGTEGQNAHSSTRKDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPSYNLPSKILCRVINVMLKAEPDTDEVFAQVTLVPETDQDENAVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFSGTIVGIEDAVPNRWSDSKWRCLKVRWDETSNIPRPDRVSPWKIEPALAPPALNPLPMPRPKRPRSNVFPSSPDSPVLTREASSKVSIDPSPASGFPRVLQGQEFSTLRGNFAESNKSVTAEKSVAWPPAVDDEKIDVVSISRRYGSENWMSMGRHEPTYSDLLSGFGANGDSFRSPLVDQTGPLASPARKHSLDQEGKFNVLPSPWPVMPSNLSLNLLDSNTKGSAHGGDVTYQTPGNVRYGAFGDYPVLHGHKVHHLHGNLLMPPPPTTHYESPRSRELMPKPVSVQISEAVKPKDGGDCKLFGFSLISSPITQEQSVSQRNVNNESPGHMHLQSYQSHAVESDQKSEQARGPKPADVLVTVDDQEKSLQASQTHLTDVHAKPLSGSARSCTKVHKKGIALGRSVDLTKFSNYDELVAELDQLFEFGGELVSPKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVR 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0535 807 CDD B3_DNA 155 257 IPR003340 GO:0003677
Dere03g0535 807 Pfam B3 DNA binding domain 157 258 IPR003340 GO:0003677
Dere03g0535 807 MobiDBLite consensus disorder prediction 391 407 - -
Dere03g0535 807 Pfam Auxin response factor 283 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere03g0535 807 SUPERFAMILY DNA-binding pseudobarrel domain 153 286 IPR015300 -
Dere03g0535 807 ProSiteProfiles PB1 domain profile. 732 807 IPR000270 GO:0005515
Dere03g0535 807 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 807 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere03g0535 807 MobiDBLite consensus disorder prediction 23 45 - -
Dere03g0535 807 MobiDBLite consensus disorder prediction 409 431 - -
Dere03g0535 807 Gene3D - 728 807 - -
Dere03g0535 807 SMART B3_2 157 259 IPR003340 GO:0003677
Dere03g0535 807 MobiDBLite consensus disorder prediction 391 438 - -
Dere03g0535 807 MobiDBLite consensus disorder prediction 23 44 - -
Dere03g0535 807 Gene3D - 154 259 IPR015300 -
Dere03g0535 807 ProSiteProfiles B3 DNA-binding domain profile. 157 259 IPR003340 GO:0003677
Dere03g0535 807 FunFam Auxin response factor 320 392 - -
Dere03g0535 807 FunFam Auxin response factor 155 259 - -
Dere03g0535 807 Pfam AUX/IAA family 721 807 IPR033389 -
Dere03g0535 807 Gene3D - 320 390 - -
Dere03g0535 807 SUPERFAMILY CAD & PB1 domains 735 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0535 Dere-ChrDere03 9313669 9317925 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0535 1 807 B3 DNA Binding Superfamily AT5G62000 65.175 0.0 1055
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere03g0535 AUX_IAA 4.9e-09 CL0072