Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0533 ATGCAAATTGAAAACCTCGAAGATTCGCCGATGTTCAGACAGCAGATCCAAACCTTGGAAGAAAACGCGGACTTATTAAGAGCCAGATGCTGGAAGTTCTACAAAGGATGTCGAAAGTACACGGAAGGGCTTGAAGAGGAATATGAAGGGGACATCGCATTTGCAAATGCACTTGAAACTTTTGGAGGAGGGCCTAGTGATCCTCTTTTTGATGTTTTGGGAGGATCTGTTATGACCAAATTGACTATTGCTTTGAGAGAAATCGGTACATATAAGGAACTTCTTCGGTCGCAGGTGGAGCACATGCTGAATGACCGATTACTACACTTTCTCAATGTTGACATCCATGATGCCAAGGAAGCTCGAAAGCGTTTTGACAAAGCCTCCCTTCAATATGACCAGGCACGTGAAAAGTTTTTGTCATTGAGGAAGAGCACTAAGCTTGATACTATCGCTGTCGTAGAAGAGGAATTGCACAATGCAAGAGATGCATTTGAGGAAGCCCGTTTCAACCTGGTCAGTGCTCTCAACCATGTTGAGGCCAAGAAGAGATTTGAGTTTTTGGAGGCTGTCCCAGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGTTATCAACTATTCCAGCAGATGGAACCTTTCATTAGCGAGGTTTTGACTATTGCGCAACAGTCAAGAGAAAATTACAATACGGAGCAGATTTCTCTTCTTGAAAGAATCCAAGAGTATAAAAGACAAATTCACCAAGATAGTAAGCTGACCTTGAATGGCACATATAGCTCTCCTAATAGAGACATGCAGCCTTTTTCTAGGATACCAAATGAAGTTGCCGATGCAGTAATGGAATCAGCTGCAAATGGAAAGGTTCAAATTCTTCGACAAGGATATCTTTCAAAGCGATCTTCCAATCTGAGAGGAGCATGGAAGAGAAGGTATTTTGTTCTCGACAGTCGAGGAATGTTATACTACCATCGCAAACCAGGGAACTGGATGCAAATGCACGGTGGCAGTCAACCATCTGCACTAAGGAATAGTGGCACTGAAAGTGGTTCCGGGCTTTTGAGCCGTCTTGCTCATCACCATGGAGGTGTCAATGATGAAAAATCTGCAGCACGTCGTGCAGTGAACTTGCTTACGTCAACAATCAAGATTGATGCTGAGCAATCGGATTTAAGATTTTGCTTCAGGATTATTTCACCATCAAAGAACTGCACATTGCAGGCAGAAAATGCGCTGGACCAGATGGATTGGGTTGAAAAGATAACTGGAGTTATTGCCTCCTTGTTGAGTGCCCAGACATTAGAAATGCCTCCCTCAGCTGACTCAGAAAGCAGTGACTCTAACTCCGCCAGCAAGGCCAATATGTTGGAAAATCCGCCAGGTGATGATCAGATTGTAAAAGGTGAAAAGCCAATTGAAGTTCTTAGAAGGGTTAGTGGGAATGACAAATGTGCTGATTGTGGTAAACCCGATCCGGACTGGGCATCCTTAAACCTCGGCATTCTTATATGCATTGAATGTTCTGGTGTTCATCGTAATCTTGGTGTGCATATATCTAAAGTAAGGTCACTGACACTTGATGTGAAAGTCTGGGACTCCTCTGTTTTGGGCATGTTTCAGTCGCTGGGTAATCTCTTTGCAAACTCAGTTTGGGAAGAGCTGTTGCATTCACCAAATAATGCGCAAACAGATGACATGCCAGTTTGTTCATTTAAGGTCAAAAATAAGTTGTTTCATGCAAAGAAACCAGAACATGATGATCCTATTTCGTTGAAGGAGAGATTCATTCACACGAAGTATTTGGAGAAAGTCTTTGTTAACCGGAAGAAGAAAACAGATCGTGTCCATTCACTGCCACACCAGTTGTGGGAAAGCATCTGTGCGAACGACAAAAGAGCAGTGTACCGGCATATTGTCAAGTCAGATGTGGATCTCAATGCTATCAGTGAGCGAGCATCATATGGTGATTCTGACGTGCCTTCTTCAAGTAATATGGACTCATTATCAAAGAAAGAAAACCAACCGGTAGAGTTGCATCAGAAAAAAGGAGAAAATCAGCCGATAGACGATAGACAAGATAGTTCTAGTTCTAGTGTGCTTCACCAGGCATGCCTAACTGCCGATTTAAGCATGATAGAGCTTCTTCTACAGTATGGTGCAGATATAAATGCTCCAGATTCAAAAGGTCAGACACCATTGCATTACTGTATAATCAATGGCAAGAGCCCAGCTGCAAAATTGCTTCTTATGAGAGGGGCCAATGCACATGCTGTAGATAAAGAAGGCAATACTGCTGTCGAGATTGCGTCAAGATCAGATTCTATTGGCAGTGATGTTTTCTCTCTTTTAACAAGCAGATAA 2364 0.4272 MQIENLEDSPMFRQQIQTLEENADLLRARCWKFYKGCRKYTEGLEEEYEGDIAFANALETFGGGPSDPLFDVLGGSVMTKLTIALREIGTYKELLRSQVEHMLNDRLLHFLNVDIHDAKEARKRFDKASLQYDQAREKFLSLRKSTKLDTIAVVEEELHNARDAFEEARFNLVSALNHVEAKKRFEFLEAVPGIMDAHLRYFQQGYQLFQQMEPFISEVLTIAQQSRENYNTEQISLLERIQEYKRQIHQDSKLTLNGTYSSPNRDMQPFSRIPNEVADAVMESAANGKVQILRQGYLSKRSSNLRGAWKRRYFVLDSRGMLYYHRKPGNWMQMHGGSQPSALRNSGTESGSGLLSRLAHHHGGVNDEKSAARRAVNLLTSTIKIDAEQSDLRFCFRIISPSKNCTLQAENALDQMDWVEKITGVIASLLSAQTLEMPPSADSESSDSNSASKANMLENPPGDDQIVKGEKPIEVLRRVSGNDKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDSSVLGMFQSLGNLFANSVWEELLHSPNNAQTDDMPVCSFKVKNKLFHAKKPEHDDPISLKERFIHTKYLEKVFVNRKKKTDRVHSLPHQLWESICANDKRAVYRHIVKSDVDLNAISERASYGDSDVPSSSNMDSLSKKENQPVELHQKKGENQPIDDRQDSSSSSVLHQACLTADLSMIELLLQYGADINAPDSKGQTPLHYCIINGKSPAAKLLLMRGANAHAVDKEGNTAVEIASRSDSIGSDVFSLLTSR 787
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0533 787 ProSiteProfiles PH domain profile. 291 427 IPR001849 -
Dere03g0533 787 Pfam Putative GTPase activating protein for Arf 472 609 IPR001164 GO:0005096
Dere03g0533 787 SUPERFAMILY Ankyrin repeat 691 776 IPR036770 -
Dere03g0533 787 MobiDBLite consensus disorder prediction 654 696 - -
Dere03g0533 787 Pfam Ankyrin repeats (many copies) 699 750 IPR002110 GO:0005515
Dere03g0533 787 ProSiteProfiles BAR domain profile. 1 225 IPR004148 GO:0005515|GO:0005737
Dere03g0533 787 SUPERFAMILY PH domain-like 292 448 - -
Dere03g0533 787 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Dere03g0533 787 SUPERFAMILY BAR/IMD domain-like 4 314 IPR027267 -
Dere03g0533 787 CDD BAR_SFC_plant 15 215 IPR035670 -
Dere03g0533 787 ProSiteProfiles Ankyrin repeat profile. 696 728 IPR002110 GO:0005515
Dere03g0533 787 SMART arf_gap_3 470 614 IPR001164 GO:0005096
Dere03g0533 787 Coils Coil 151 171 - -
Dere03g0533 787 MobiDBLite consensus disorder prediction 436 469 - -
Dere03g0533 787 ProSiteProfiles ARF GTPase-activating proteins domain profile. 470 614 IPR001164 GO:0005096
Dere03g0533 787 CDD ArfGap 473 601 - -
Dere03g0533 787 MobiDBLite consensus disorder prediction 336 356 - -
Dere03g0533 787 MobiDBLite consensus disorder prediction 656 672 - -
Dere03g0533 787 ProSiteProfiles Ankyrin repeat region circular profile. 696 727 - -
Dere03g0533 787 PANTHER CENTAURIN/ARF 4 785 IPR045258 GO:0005096
Dere03g0533 787 SMART PH_update 292 429 IPR001849 -
Dere03g0533 787 MobiDBLite consensus disorder prediction 336 353 - -
Dere03g0533 787 Gene3D - 284 441 IPR011993 -
Dere03g0533 787 Gene3D Arf GTPase activating protein 456 616 IPR038508 -
Dere03g0533 787 PRINTS HIV Rev interacting protein signature 524 545 IPR001164 GO:0005096
Dere03g0533 787 PRINTS HIV Rev interacting protein signature 501 518 IPR001164 GO:0005096
Dere03g0533 787 PRINTS HIV Rev interacting protein signature 482 501 IPR001164 GO:0005096
Dere03g0533 787 Pfam PH domain 293 426 IPR001849 -
Dere03g0533 787 ProSiteProfiles Ankyrin repeat profile. 729 761 IPR002110 GO:0005515
Dere03g0533 787 SUPERFAMILY ArfGap/RecO-like zinc finger 471 609 IPR037278 -
Dere03g0533 787 CDD PH_ACAP 294 431 - -
Dere03g0533 787 Coils Coil 227 247 - -
Dere03g0533 787 Gene3D Arfaptin homology (AH) domain/BAR domain 3 250 IPR027267 -
Dere03g0533 787 ProSiteProfiles Ankyrin repeat region circular profile. 729 761 - -
Dere03g0533 787 Pfam BAR domain of APPL family 4 233 IPR004148 GO:0005515|GO:0005737
Dere03g0533 787 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 453 615 - -
Dere03g0533 787 Gene3D - 666 777 IPR036770 -
Dere03g0533 787 Coils Coil 118 138 - -
Dere03g0533 787 MobiDBLite consensus disorder prediction 673 690 - -
Dere03g0533 787 SMART ANK_2a 696 725 IPR002110 GO:0005515
Dere03g0533 787 SMART ANK_2a 729 758 IPR002110 GO:0005515
Dere03g0533 787 MobiDBLite consensus disorder prediction 436 456 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere03g0533 Dere-ChrDere03 9273693 9284597 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0533 469 607 C2H2 Transcription Factor Family AT4G21160 40.000 8.98e-21 92.8