Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0529 ATGGTGAGTTTGCTGAATTTTGTGGAGGAACGGAGGGAGGAAGAGTTTCGGTTTTTGTGTGTCCGCGAGACGGTGTTCAAAAATTTGAGGTACGAATTTGTTGAATTGACAGATTATGGCGTTTCCTGCAAAATTCCCCATCCATCTGCTTCGGTTGCTGACAAATTCGATGTGGCATATTCCGTGTTAGGTCGATGGATGCCTTTTGAAATAATGGATCAGAGGGCCGTATCTGCCTCATCACACTTTTTTGATGACATTTCATTTTGCTCTGAGAGGAATACCGGATTGCAGAGGCCAAAATCTGTTAATGACCATTACCAACAAGGAAAGAATGGAATGGTAGCATCACCTGGCAGCATTTTGAATGCTTTTTCACCTCAAGAACTTGGTGCAAAGACTGTCAGGCCAATGTCATTGACAGGTCTCTCTGGTGAAATTACAGAAAAGCTACATGTTGGTGGAGAAGAGGGCATTGTTGATATGTTTACAGCCTCCAAGGAACTGTTAAATCGTCATCCCAGATCCCAATCTAATGTGTGTATGCAGCCAGCATCTAACCCATATGGTTTAGTTGGGAACAAGATCATCACTAATGCTGCCTCTCGTGAAAGTAGTCTATTCTCAAGCTCACTATCTGAGATATTTACCCGAAAGTTGAGGTTAGCGGGGAACGATGTTCTGCCTCAACAACCTGTTACTGTTGGTTCACTTCCTGAGGAGGAACCATATAAATCTCTTGAAGAAATTGAGGCTGACACTATTGGAAATCTACTTCCTGATGAGGATGATCTATTTTCTGGTGTCAATGATGACTTAGGATACAATACTCCTGCCAGAACAGGTGATGACTTGGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGCTGGAAGGAGATGAGCATCTAAATTATGGAAAAAAGATCAGTGGTCTGGATGGAGATTCTGGTTGCTTTGGAGGTTTTAAAGGAAATCTTCCTTTTGGTGAACACCCTTCTAGAACACTTTTTGTTAGAAACATTAACAGCAATGTTGAAGATTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCACTTATACTGCCTGCAAGCATCGTGGATTTTTTATGATTTCTTATTATGACATAAGAGCTGCACAAAATGCAATGAAATCTCTTCAAAATAGGTTACTGAGGTCTAGGAAACTTGACATACATTATTCAATACCAAAGGTTAATGCTCCAGAGAATGATATTAGCCATGGTACACTATTGCTATCTGGTCTTGATTCTTCTGTTTCGGATGATGAACTTAAACAAATTTTTGGATTTTATGGAGAAATTAAAGAAATCTTTGAATCTCCAGAAATAAGTCATCACAAATTTATAGAGTTTTATGATGTGCGAGCTGCAGAAGCTGCTCTTCGTGCTTTGAACAGGAGTGAAATTGCTGGGAAGTCCATCAAGCTTGAACCTGGTTATCCTAGGGGTGCAAGTGCAACATGTCCGATGCAGCAGTCCCAGAAGGGGCAGGATGAATCTGATCTTGGTCAAAGCACATGTGACAACTTATCATTAAGACCGAAGGCAATAATGTCATCTGGAGTAATTGCATCTGGCTGCTTGGATAATGGATCTAGTCAGGGATTTCAATCAACAACACGGCAAACTATGAATGCCTTACCAATAAATGCAATCTCACATGTGAATTCTGGCATTCACAACACAGTGAGAGGGCCATCTGTTGGAAAAGTTTCTAGTGTTTGCGAGTCCAGTAAATTTGTCGATGCTATGAAATTTGCATCAATTCCCAGATTCCATCCTCATTCGCTCCCTGAATATCCTGATAGTTTAGCTAATGGCAGTCCTTACAACTTTTCAAGAACCATTAGCAATGTGTCTGGTAATATTGGTCCTGGAGTGACAGATAGCTCTGACAGCAGGCACATGCCTGGATTGGGTTCAACTGGGAAGCTGACAGACTTTAATGGAGGAGGAAATGGGAACCACCCTAATCATGGGCTTTATCACATGTGGAATGGCTCCAATTTGCACCAGCAACCTCCTCCAAGTCCAATGGTTTGGCAGAAAACACCATCATTTGTTAATGGTGCTTGTGCTCCTTGTCTTCCACAAATGCCCAGCTTTCCCGGATCATCGCCTCATATGCTGAGAGCATCACGAATAGACCACCATGTTGGATCAGCTCCTGTTGTTACAGCCTCTCCTTGGGACAGGCAACATTCTTATCTGGTAGAGTCCCCTGAATCTTCTGGTTTTCGCATGGGTTCTCTTGGGAGTACTGGTTTCCCTGGTACATGGCAATTGCATCCTCCAGAATTTTCTTCTCACAACATGTTTTCTCATGTTGGTGGGAATGGCATGGATTTGTCATCCAATGCTGGGCAGGGCTCTCCAAATCAGTTGTCACATGTTTTCCCTGGGAGACATCCCATGGCTTCAATGTCTAAATTTGATTCTACCAATGAGAGAATGAGAAACCTCTATCATCGTAGAAGTGATGCTAACACTAACAGTGCTGATAAAAAGCAATTCGAACTTGACCTAGGCCGCATATTGCGTGGAGAAGACAATCGAACAACACTTATGATTAAGAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCAGCTATAGATGAGCAGTGTCGGGGAACTTATGATTTTTTGTATTTGCCAATTGACTTCAAGAACAAATGTAATGTTGGCTATGCTTTCATCAACATGATTGATCCTGGTCAGATTATTCCCTTCCACCAGGCTTTTAATGGGAAAAAGTGGGAGAAGTTCAATAGTGAAAAGGTGGCCTCGCTTGCATATGCTCGAATTCAGGGAAAAGCTGCTCTTATTGCTCATTTTCAGAATTCAAGTCTAATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCACACAGAAGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCATGGGTACCAATATTAGATCGAGACCTGGGAAATCACGTACTAGTAGTAATGAGGAGAATCGCAGCTCAGGGAGTTCTTCAGCTTTGGCTAGTGGAGAGGAGTCCTCTAACGGGACAAGTTCTTCAAGAAACTCAGACTGA 3114 0.4236 MVSLLNFVEERREEEFRFLCVRETVFKNLRYEFVELTDYGVSCKIPHPSASVADKFDVAYSVLGRWMPFEIMDQRAVSASSHFFDDISFCSERNTGLQRPKSVNDHYQQGKNGMVASPGSILNAFSPQELGAKTVRPMSLTGLSGEITEKLHVGGEEGIVDMFTASKELLNRHPRSQSNVCMQPASNPYGLVGNKIITNAASRESSLFSSSLSEIFTRKLRLAGNDVLPQQPVTVGSLPEEEPYKSLEEIEADTIGNLLPDEDDLFSGVNDDLGYNTPARTGDDLEDFDLFSSGGGMELEGDEHLNYGKKISGLDGDSGCFGGFKGNLPFGEHPSRTLFVRNINSNVEDSELKALFEQYGDIRTTYTACKHRGFFMISYYDIRAAQNAMKSLQNRLLRSRKLDIHYSIPKVNAPENDISHGTLLLSGLDSSVSDDELKQIFGFYGEIKEIFESPEISHHKFIEFYDVRAAEAALRALNRSEIAGKSIKLEPGYPRGASATCPMQQSQKGQDESDLGQSTCDNLSLRPKAIMSSGVIASGCLDNGSSQGFQSTTRQTMNALPINAISHVNSGIHNTVRGPSVGKVSSVCESSKFVDAMKFASIPRFHPHSLPEYPDSLANGSPYNFSRTISNVSGNIGPGVTDSSDSRHMPGLGSTGKLTDFNGGGNGNHPNHGLYHMWNGSNLHQQPPPSPMVWQKTPSFVNGACAPCLPQMPSFPGSSPHMLRASRIDHHVGSAPVVTASPWDRQHSYLVESPESSGFRMGSLGSTGFPGTWQLHPPEFSSHNMFSHVGGNGMDLSSNAGQGSPNQLSHVFPGRHPMASMSKFDSTNERMRNLYHRRSDANTNSADKKQFELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTEGPNAGDPEPFPMGTNIRSRPGKSRTSSNEENRSSGSSSALASGEESSNGTSSSRNSD 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0529 1037 SUPERFAMILY RNA-binding domain, RBD 867 952 IPR035979 GO:0003676
Dere03g0529 1037 Gene3D - 330 413 IPR012677 -
Dere03g0529 1037 MobiDBLite consensus disorder prediction 494 519 - -
Dere03g0529 1037 Gene3D - 414 500 IPR012677 -
Dere03g0529 1037 MobiDBLite consensus disorder prediction 998 1037 - -
Dere03g0529 1037 Coils Coil 382 402 - -
Dere03g0529 1037 CDD RRM3_MEI2_like 868 953 IPR034454 -
Dere03g0529 1037 Pfam RNA recognition motif 2 865 961 IPR007201 -
Dere03g0529 1037 FunFam MEI2-like protein 5 isoform 2 325 419 - -
Dere03g0529 1037 PANTHER RNA RECOGNITION MOTIF-CONTAINING 182 1028 - -
Dere03g0529 1037 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 421 494 IPR000504 GO:0003723
Dere03g0529 1037 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 336 409 IPR000504 GO:0003723
Dere03g0529 1037 SUPERFAMILY RNA-binding domain, RBD 333 496 IPR035979 GO:0003676
Dere03g0529 1037 MobiDBLite consensus disorder prediction 976 1037 - -
Dere03g0529 1037 MobiDBLite consensus disorder prediction 499 519 - -
Dere03g0529 1037 FunFam Protein MEI2-like 1 420 516 - -
Dere03g0529 1037 SMART rrm1_1 867 943 IPR000504 GO:0003723
Dere03g0529 1037 SMART rrm1_1 337 405 IPR000504 GO:0003723
Dere03g0529 1037 SMART rrm1_1 422 490 IPR000504 GO:0003723
Dere03g0529 1037 CDD RRM1_MEI2_like 335 410 IPR034453 -
Dere03g0529 1037 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 424 488 IPR000504 GO:0003723
Dere03g0529 1037 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 338 402 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0529 Dere-ChrDere03 9230165 9237343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0529 331 487 Eukaryotic Initiation Factors Gene Family AT3G16380 25.824 5.27e-08 55.1