Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0526 ATGGGGAAATGGGTAGCTGAGATTCGCGATCCTAAGAAAGTTGCGAGTGTATGGCTCGAAACCTTCGACACAGCCGAGGCGGCTGCACTTGCGTACGATGAAGCTGCTCTCAGATTCAAAGGAAGCAAGGCTAAGCTCAATTATCCTGAAAGGGTTCGGCTTCAGCCTCCTGGGACGACGTCGTCTGCTCACTTGGGTTACATTACAAATCTTATGGCATGCCTGGATTTTATGGGAGAGATATGTTTTACTCTTCTCATCAGCAACCCTATACAGCTTTGTCTTCCTCTTCGTCGTCTGGAATGTCTCACCAGCAACAACAAGAAGAAGAACTTCTACAGTTTTCGATACAAATTTGGAGGTTCTTCGCCTTCTAGTTTTCAATCCTGTGCGAATTGGACAAACGATGAATTTGATGGTAAGCATTGA 429 0.4569 MGKWVAEIRDPKKVASVWLETFDTAEAAALAYDEAALRFKGSKAKLNYPERVRLQPPGTTSSAHLGYITNLMACLDFMGEICFTLLISNPIQLCLPLRRLECLTSNNKKKNFYSFRYKFGGSSPSSFQSCANWTNDEFDGKH 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0526 142 SUPERFAMILY DNA-binding domain 2 50 IPR016177 GO:0003677
Dere03g0526 142 ProSiteProfiles AP2/ERF domain profile. 1 49 IPR001471 GO:0003700|GO:0006355
Dere03g0526 142 SMART rav1_2 2 55 IPR001471 GO:0003700|GO:0006355
Dere03g0526 142 Gene3D AP2/ERF domain 1 51 IPR036955 GO:0003700|GO:0006355
Dere03g0526 142 PANTHER DNA-BINDING DOMAIN 2 98 IPR044808 GO:0003700|GO:0009873
Dere03g0526 142 Pfam AP2 domain 2 41 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0526 Dere-ChrDere03 9138074 9138644 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0526 2 54 AP2-EREBP Transcription Factor Family AT5G61890 83.019 8.81e-26 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere03g0526 AP2 8e-09 CL0081