Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0523 ATGGCTAGTGGAAAGCATGCGAAAACCAGGCAGCAACTCAAAATTGAATCTAAGATTGATTGTAATCTCAAATCCGATTTAACAACCCTAATGATATTAGAAGCTAAAGTGGATCGAAATCATGGAAAGAGATCACTTTCCGAAGAAGCGCAAGAGAAAGAAGAAGAAGAACACTTGTTTCCTGTCTACTCCGAACGTTCACAGCAAGACATGTCAGCCATGGTTTCTGCTCTTGCTCAAGTCATTGGTGCTACCCCTAATGCCTATCATGACCCTTTAACTGTGTCGCAATCCAGCCCTGGACAAAACAATGAACAATCCCAATCACTCCAGCATCAAGGGAATGTAAGAAGAAGACACTACAGAGGAGTAAGGCAAAGGCCATGGGGTAAATGGGCCGCTGAGATTCGCGATCCTAAGAAAGCTGCGAGAGTTTGGCTTGGAACCTTCGACACAGCCGAGGCTGCTGCGCTTGCGTACGATGAAGCTGCTCTCAGATTCAAAGGAAGCAAGGCTAAGCTCAATTTTCCTGAAAGGGTTCAGCTTCAGCCCCCTGAGACGACGTCGTCTGCTCACTTGGGTTACCTTACAAATCGTCCTCAAGTTCCAGAACAACAAGCACACAACGTCCCACTGGCTCTTGCTCCTCCGACAACGTTCTCACAACAACCTTGTTATGATTCAAATACGTACCAGTATCAACAGTTTTTGGGAAGTGGTGGAAGTGGCAGTTTCAGTTACGGCATGCCCGGATTCTACGGGAGAGACATGTTTTACTCTTCTCATCAGCAACCCTATACAGCCTTGTCTTCGTCTTCATCGTCTGGAATGTCCCACCAGCAACAACAAGAAGAAGAACTTCTACGGTTTTCGATGCAATTTGGAGGTTCTTCGTCTTCTAGTTCTCAACCTTCTACAAATTGGACAAACGATGAATTTGATGGTAAGCGTTGA 954 0.457 MASGKHAKTRQQLKIESKIDCNLKSDLTTLMILEAKVDRNHGKRSLSEEAQEKEEEEHLFPVYSERSQQDMSAMVSALAQVIGATPNAYHDPLTVSQSSPGQNNEQSQSLQHQGNVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPERVQLQPPETTSSAHLGYLTNRPQVPEQQAHNVPLALAPPTTFSQQPCYDSNTYQYQQFLGSGGSGSFSYGMPGFYGRDMFYSSHQQPYTALSSSSSSGMSHQQQQEEELLRFSMQFGGSSSSSSQPSTNWTNDEFDGKR 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0523 317 MobiDBLite consensus disorder prediction 90 114 - -
Dere03g0523 317 SUPERFAMILY DNA-binding domain 120 178 IPR016177 GO:0003677
Dere03g0523 317 PANTHER DNA-BINDING DOMAIN 64 279 IPR044808 GO:0003700|GO:0009873
Dere03g0523 317 SMART rav1_2 120 183 IPR001471 GO:0003700|GO:0006355
Dere03g0523 317 Pfam AP2 domain 120 169 IPR001471 GO:0003700|GO:0006355
Dere03g0523 317 ProSiteProfiles AP2/ERF domain profile. 120 177 IPR001471 GO:0003700|GO:0006355
Dere03g0523 317 MobiDBLite consensus disorder prediction 269 317 - -
Dere03g0523 317 MobiDBLite consensus disorder prediction 269 310 - -
Dere03g0523 317 MobiDBLite consensus disorder prediction 89 122 - -
Dere03g0523 317 MobiDBLite consensus disorder prediction 40 60 - -
Dere03g0523 317 CDD AP2 120 178 IPR001471 GO:0003700|GO:0006355
Dere03g0523 317 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Dere03g0523 317 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Dere03g0523 317 FunFam Ethylene-responsive transcription factor 2 119 178 - -
Dere03g0523 317 Gene3D AP2/ERF domain 119 179 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0523 Dere-ChrDere03 9095932 9100756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0523 58 300 AP2-EREBP Transcription Factor Family AT5G61890 49.600 3.11e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere03g0523 AP2 7.1e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0523 03 9095932 9100756 Dere03g0523 03 9095932 9100756 ECH
Dere03g0523 03 9095932 9100756 Dere01g2061 01 34616764 34618744 ECH