Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0465 ATGGCTTCCCCTCCGGTGAATTCTTTACCCGTAGCGTACCAGGCATGGACGAGTCTGGCAGTACCGGATTGGCTGAACAAAGGGGACAACGCGTGGCAGATGATCTCTGCGACTCTGGTGGGCATACAGAGCATGCCAGGGCTCGTAATTCTCTACGGTAGCATCGTGAAGAAGAAATGGGCTGTGAACTCTGCTTTCATGGCGCTCTACGCTTTCGCGGCGGTAAGCATATGCTGGGTCACGTGGGCCTACAAGATGTCCTTCGGCGACAAGCTGTTGCCCTTCTGGGGAAAAGCCGGGCCAGCGTTGGGCCAGAAGTTCCTGCTGAAGCAGGCGGCGCTGCCGGCGACGCCGCATTACTATAAGAGCGGCGCGCTGGAGACTGCGGAGATCGAGCCGTTCTATCCGATGGCGTCGATGGTGTGGTTTCAGTGCGTGTTCGCGGCGATCGCGGTGGTTCTGCTGGCGGGATCGGTGCTGGCGAGGATGAACTTCAAGGCGTGGATGATGTTTGTACCCTTGTGGCTCACGTTCTCTTACACGGTGGGTGCGTTCAGCTTGTGGGGTGGTGGTTTCCTGTTCCACTGGGGCGTCATGGACTACTCCGGTGGTTACGTCATTCATCTTTCTTCTGGGATCGCTGGATTCACCGCCGCTTATTGGGTTGGACCGAGATCGAAAAAAGACAGGGAGAGGTTTCCACCGAACAATGTTTTGCTGACGTTGGCAGGGGCAGGGCTGCTATGGTTGGGATGGGCAGGGTTCAACGGAGGAGACCCTTACTCGGCGAACATAGACTCGTCGATGGCGGTGCTCAACACTAACATATGCGCAGCGACGAGCCTGCTGGTGTGGACCTGGCTCGACGTCATCTTCTTCAGGAAGCCCTCCGTTATCGGAGCAGTCCAGGGCATGATCACCGGTCTCGTCTGTATCACTCCCGGCGCCGGTCTGGTTCAAGGATGGGCAGCCATAGTAATGGGAGTATTATCAGGGAGCGTGCCATGGTTCAGCATGATGATACTAGGGAAGAAACTCAAAGTGTTCCAAATGGTTGACGACACTCTCGCCGTCTTCCACACTCACGCCGTCGCCGGACTTCTCGGCGGCGTCCTAACCGGCCTCTTCGCGGAGCCGCGCCTCTGTGCGCTGTTCCTTCCGGTGACCAACTCGAGAGGAGGCGTGTATGGAGGCTCAGGAGGAGTTCAAATCCTGAAACAAATCGTGGGAGGCTTGTTCATCATTGGATGGAACCTCGTGGTCACGTCAATCATCTGCGTGGTGGTGAAGTTCTTCATCCCCTTGAGGATGTCGGAGGAGGAGTTGCTGATCGGAGACGATGCTGTTCATGGAGAAGAAGCTTATGCCTTGTGGGGTGATGGAGAGAAGCTTAGCATCTATTCTGAAGAGACCACCCACCATGGAGTTTTGGCATCAAGCGGTGCCACTCAGGTTGTCTAG 1461 0.5633 MASPPVNSLPVAYQAWTSLAVPDWLNKGDNAWQMISATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVSICWVTWAYKMSFGDKLLPFWGKAGPALGQKFLLKQAALPATPHYYKSGALETAEIEPFYPMASMVWFQCVFAAIAVVLLAGSVLARMNFKAWMMFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKKDRERFPPNNVLLTLAGAGLLWLGWAGFNGGDPYSANIDSSMAVLNTNICAATSLLVWTWLDVIFFRKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGVLSGSVPWFSMMILGKKLKVFQMVDDTLAVFHTHAVAGLLGGVLTGLFAEPRLCALFLPVTNSRGGVYGGSGGVQILKQIVGGLFIIGWNLVVTSIICVVVKFFIPLRMSEEELLIGDDAVHGEEAYALWGDGEKLSIYSEETTHHGVLASSGATQVV 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0465 486 NCBIfam ammonium transporter 29 455 IPR001905 GO:0008519|GO:0016020|GO:0072488
Dere03g0465 486 FunFam Ammonium transporter 12 458 - -
Dere03g0465 486 ProSitePatterns Ammonium transporters signature. 200 225 IPR018047 GO:0008519|GO:0016020|GO:0072488
Dere03g0465 486 PRINTS Rhesus blood group protein signature 270 292 IPR002229 GO:0005886
Dere03g0465 486 PRINTS Rhesus blood group protein signature 239 257 IPR002229 GO:0005886
Dere03g0465 486 PRINTS Rhesus blood group protein signature 144 160 IPR002229 GO:0005886
Dere03g0465 486 PRINTS Rhesus blood group protein signature 325 343 IPR002229 GO:0005886
Dere03g0465 486 Pfam Ammonium Transporter Family 31 455 IPR024041 GO:0008519|GO:0016020|GO:0072488
Dere03g0465 486 Gene3D Ammonium transporter AmtB like domains 9 458 IPR029020 -
Dere03g0465 486 SUPERFAMILY Ammonium transporter 24 437 - -
Dere03g0465 486 PANTHER AMMONIUM TRANSPORTER MEP2 17 465 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0465 Dere-ChrDere03 8471669 8475966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0465 137 465 Inorganic Solute Cotransporters AT2G38290 72.644 3.40e-170 482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0465 03 8471669 8475966 Dere03g0465 03 8471669 8475966 ECH