Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0439 ATGGGAGATGGCAGTCGGTCTAACAACCATAGCAGTGGTAATGGCCATAAACCGGAGTGGCTACAGCAATATGATCTGATTGGGAAGATTGGGGAAGGTACGTACGGTCTTGTATTTCTCGCGAGGATCAAGTCTCCGACGAATCGTGGAAAATCCATTGCCATCAAGAAATTTAAGCAGTCCAAGGACGGCGATGGCGTCTCTCCCACAGCAATCCGTGAAATTATGTTACTTAGGGAGATATCACACGAAAATGTCGTGAAGCTTGTGAATGTTCACATCAATCATGGGGATATGTCTCTGTATCTAGCATTTGACTATGCTGAACATGACCTTTATGAAATCATTAGACATCACAGAGATAAAGTCAACCAACCCATTAATCAATACACTGTTAAATCCTTACTCTGGCAGCTGCTCAATGGACTAAACTATCTACACAGTAATTGGATGATTCATCGAGATCTAAAGCCGTCAAATATATTGGTTATGGGTGAAGGAGAGGAACATGGAATCGTTAAAATTGCTGACTTTGGGCTTGCAAGGATATATCAAGGCCCTCTGAAGCCATTATCTGAAAATGGAGTTGTTGTAACCATTTGGTATCGTTCACCTGAGTTGCTTCTTGGAGCAAAACATTATACAAGTGCTGTTGATATGTGGGCGGTGGGATGCATTTTTGCTGAGTTGTTAACGTTGAAGCCACTATTTCAAGGGGCAGAAGTCAAAGCTACACCAAATCCTTTTCAGCTTGATCAACTTGACAAAATATTCAAGGTTTTAGGTAATTTATGTGCTAATCTTTTTTTCTTTCTACCTGCTGGGGGTGTTCATTCTTTGGATGGATATTTCAGAACTACATCACAGGACATTGTTATTATGCCAGGCCATCCTACTTTGGAAAAGTGGCCTTCCTTAGCAAATCTTCCCCATTGGCAGCAAGATCTGCAACATATACAAGGGCACAAATATGACAACACTGGCCTCTATAATTTTGTACACATTCCGCCAAAAAGTCCTGCATATGATCTCTTGTCAAAGATGCTTGAATATGATCCTCGAAAGCGTATAACGGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATTGAACCACTACCTGGGCGGAATGCACTTGTACCATGCCAACCTGGAGAGAAATTTGTGAACTATCCCACTCGTCCAGTGGACACAACAACAGATTTTGAAGGGACAACCAGCCTGCAACCTTCGCAACCGGTTTCATCTGGAACTGCAGTTTCTGGTGGCATGCCAGGCGCACACATGTCAAATAGATCTGTCCCTCGGTCAATGAATGTTGTTGGTATGCAAAGGATGCCACATCAGGCATTGCAAACTTATAATCTTTCGTCACAGGCAGGGATGGGTGGAGGTGGTGGAATGAATCCTGGTGGTATACCAATGCAACGTGGTGTTGCACCAGCCCATCAGCAGCAACAGGTTTTTGAGAAGAAAAGACCCCGGAATGGGGATGTACCCTCCTCCACAGCAGAAGTCAAGACGAATATAAGAAATAAAGTGAAGATAGATCGGGTTCAACATTTGGGTGTACCTGAACTGATGACGTTTCAAGACCCCCATGAGATGGTATGCCTTCAGTGCTTGCACACCCCTCTTCTTCCTCGTTGCAGTTACAGGTTTCTTGCCATGGTCACAAAAATCTGGATGCTAGGAAGTGAACTATAA 1707 0.4353 MGDGSRSNNHSSGNGHKPEWLQQYDLIGKIGEGTYGLVFLARIKSPTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHGDMSLYLAFDYAEHDLYEIIRHHRDKVNQPINQYTVKSLLWQLLNGLNYLHSNWMIHRDLKPSNILVMGEGEEHGIVKIADFGLARIYQGPLKPLSENGVVVTIWYRSPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGNLCANLFFFLPAGGVHSLDGYFRTTSQDIVIMPGHPTLEKWPSLANLPHWQQDLQHIQGHKYDNTGLYNFVHIPPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPLPGRNALVPCQPGEKFVNYPTRPVDTTTDFEGTTSLQPSQPVSSGTAVSGGMPGAHMSNRSVPRSMNVVGMQRMPHQALQTYNLSSQAGMGGGGGMNPGGIPMQRGVAPAHQQQQVFEKKRPRNGDVPSSTAEVKTNIRNKVKIDRVQHLGVPELMTFQDPHEMVCLQCLHTPLLPRCSYRFLAMVTKIWMLGSEL 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0439 568 CDD STKc_CDK8_like 23 368 - -
Dere03g0439 568 MobiDBLite consensus disorder prediction 403 431 - -
Dere03g0439 568 Gene3D Transferase(Phosphotransferase) domain 1 109 380 - -
Dere03g0439 568 MobiDBLite consensus disorder prediction 403 419 - -
Dere03g0439 568 ProSitePatterns Protein kinases ATP-binding region signature. 30 57 IPR017441 GO:0005524
Dere03g0439 568 PANTHER CELL DIVISION PROTEIN KINASE 22 374 - -
Dere03g0439 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Dere03g0439 568 Pfam Protein kinase domain 24 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0439 568 SUPERFAMILY Protein kinase-like (PK-like) 19 369 IPR011009 -
Dere03g0439 568 Gene3D Phosphorylase Kinase; domain 1 8 108 - -
Dere03g0439 568 ProSiteProfiles Protein kinase domain profile. 24 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0439 568 SMART serkin_6 24 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0439 568 FunFam CMGC/CDK/CDK8 protein kinase 109 271 - -
Dere03g0439 568 FunFam Cyclin-dependent kinase e-1 12 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0439 Dere-ChrDere03 8178345 8187262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0439 1 491 Core Cell Cycle Gene Families AT5G63610 70.565 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Dere03g0439 Pkinase 7.1e-64 CL0016