Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0434 ATGCATCTACTTTCACACGTATCCTATATTCCTATGGGAATAACGAGAAAAAGAGAGAAGAGAGAAGCACGAAGCTTGATTAGAATGAAGGGCGAATTGGAGTTACCACCTGGGTTCAGATTTCACCCTACAGACGATGAGCTGGTGAATCACTATTTGTGTAGGAAATGTGCTGCTCAGTCCATTGCTGTTCCCATTATCAAAGAGATCGATCTGTACAAGTTTGATCCATGGCAGCTTCCTGAAATGGCGCTGTACGGGGAGAAAGAATGGTACTTCTTTTCTCCGAGGGACCGGAAGTATCCGAACGGGTCAAGACCGAACCGGGCGGCTGGATCCGGTTATTGGAAAGCGACCGGAGCCGACAAGCCGATTGGAAAGCCGAAGCCGCTGGGTATAAAGAAGGCACTCGTGTTTTACGCGGGTAAAGCCCCCAGAGGCGTCAAAACCAATTGGATCATGCACGAATATCGCCTCGCTAACGTTGACAGATCCGCCGGCAAGAAAACCAACCTAAGGCTTGATGAATGGGTATTATGCCGAATTTACAACAAGAAAGGGACGATTGAGAAATACAATGCGGCGGTGGATCAGAAAGCAGCCAAGTTATCAGAATTTCATAAGCATGAGACCAAACCACAAATCAACATGTACGACCCCACCAAGGTACAGGCACCAGCAGCATCGACGTTCGCGAACGACCAATTGTATATGGACACGTCGGATTCGGTGCCGAGGTGGCACACAGACTCGAGCTGCTCCGAGCACGTGGTTTCCCCGGACGTCACGTGCGACAGAGAGGTACAGAGCGAGGTTAAGTGGAACGAGCTAGGGCTAGGAGGAGGAGATGGGTTTGATTTTGAGTTCAATTACATGGACACTAATATGAATAGCTTCTCGGGAGATGACCCTTTTGCCCCTCCAGTACAGTACCAGATGAACCAGCTCTCGCCATTGCAGGACGTGTTCATGTTTCTACAAAAACCATTTTGA 993 0.4894 MHLLSHVSYIPMGITRKREKREARSLIRMKGELELPPGFRFHPTDDELVNHYLCRKCAAQSIAVPIIKEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKPLGIKKALVFYAGKAPRGVKTNWIMHEYRLANVDRSAGKKTNLRLDEWVLCRIYNKKGTIEKYNAAVDQKAAKLSEFHKHETKPQINMYDPTKVQAPAASTFANDQLYMDTSDSVPRWHTDSSCSEHVVSPDVTCDREVQSEVKWNELGLGGGDGFDFEFNYMDTNMNSFSGDDPFAPPVQYQMNQLSPLQDVFMFLQKPF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0434 330 ProSiteProfiles NAC domain profile. 35 185 IPR003441 GO:0003677|GO:0006355
Dere03g0434 330 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 34 238 - -
Dere03g0434 330 FunFam NAC transcription factor 44 189 - -
Dere03g0434 330 Gene3D NAC domain 44 189 IPR036093 GO:0003677|GO:0006355
Dere03g0434 330 Pfam No apical meristem (NAM) protein 36 159 IPR003441 GO:0003677|GO:0006355
Dere03g0434 330 SUPERFAMILY NAC domain 29 185 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0434 Dere-ChrDere03 8133322 8137306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0434 29 330 NAC Transcription Factor Family AT1G01720 62.338 3.76e-127 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere03g0434 NAM 3.2e-38 No_clan