Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0416 ATGGCGAACAAAAGTGGCAAGAAACCATTGAGCCTCAACGACAGCCATTATCGGTTCCTCCAGGACCTTTCTGCTCCTCCTAGGCCCTCATCAAAGCTATCTGATAAGTCGTCCACGATAACGCTCGAAGGCCGAAGGCGGCAGCAGGGCAAAGCTTTCTCGAAGGACAGCAAAAGTGAAGATGATAGCATCCCTCAATTTTCTGCGATTACTGACTTTGATTCTCCTATTGAGCAACGATCAGCGGAAGACGAAAGGCCGATCAAGATAGAAGGTCGACGCCGTCTCTGCAAAGTTTTGCCGAAGGAAAATAGTAATGATCAAGGTGATAATATTCCCCAGTCTCAAGAGCTGACCGACTTTGACACGCACAAGGAGGGAAAGATGACGAAGGTTAAAGTGGAAGGGCGACGCCGCCTCTGCAAGGTGTCATACTCAGACAATGATAATGCTGATAAAACGCTGGCGCTTGATGAGCCGGATGTTTCTGACCTTGTGGATTTTGATTCACCCCCTTTGACATCGAAAAATGTCATTGAGATTGATGAAGGTCGGGGTAGGAATGAAATTAGGGATATCTTAGATGAGTTGAGCTCGAAGTTTGACATTCTTTCAATTGAGAGGCAGAGAGTACCAAAATCAGTGCAGACGATTGAAGATTCTTCTGCTTTGGGTAGAGGAGAAGACACTGTGGAAGATCAGGGTGTTGATTATGCGAGCGCAGATTCTTCATTTTCACCTCAACAGGATCCCTGTGCAACTAAGAGTGCTGGTGGAAGTTTTGAACACGTAGAGGATGATTCAGACGATTCTGTTGAATTATTGGATCATTTTGACTCCGAGAGTGTTAGTTGTATAACAATGAGGGGCCCAAATTATACATACAAGTTGCCAGGTAAAATCGCAAAAATGTTGTATCCACATCAGCGGGATGGCTTGAAGTGGCTCTGGTCTTTACATTGCCAGGGTAAGGGTGGAATCTTGGGTGATGACATGGGTTTGGGAAAAACAATGCAAATGTGTGGTTTTCTGGCTGGCTTATTTCATTCACGTTTAATTAGAAGGGCATTGGTTGTGGCACCAAAAACCTTACTGCCTCACTGGATCAAAGAACTATCAGCTGTTGGCCTCTCTGAGAAGACAAGAGAATACTTTGGAACTTGTTCAAAAGCCCGAGAATATGAACTTCAATACATACTTCAGGATAAAGGCATTCTTCTCACGACATATGATATTGTTCGTAATAATTCTAAGTCATTACGGGGGAGTTATCTATCTGATGATGAGGAAAGCGAAGACAGCCCCATATGGGATTATATGATACTTGATGAGGGTCATCTTATAAAGAATCCAAGCACACAGAGAGCTAAAAGTTTGCTTGAGATACCAAGTGCCCATCGCATTGTCATTAGTGGCACACCATTGCAGAATAATCTAAAGGAGTTATGGGCCTTGTTCAATTTCTGTTGCCCTGAGTTGCTCGGGGATAAGAAATGGTTCAAAGAAAGATTTGAGTCAGCCATACTTCGTGGAAATGACAAGAAAGCTTCTGACAGAGAGAAGCGTGTTGGTTCTTTTGTTGCAAAGGAACTAAGAGATCGTATTCAGCCTTACTTTTTAAGACGTCTAAAGAGTGAGGTATTTAATCAAGATGATAAGAATACAACTGCAAAACTTTCTCAGAAACAAGAGATCATTGTGTGGCTACGATTGACCAGTGTTCAGCGACATCTTTATGAAGCATTTCTGAGGAGTGAGATTGTTCTTTCAGCATTTGATGGCTCACCGCTTGCTGCACTTACGATTTTGAAGAAAATATGTGATCATCCCCTTCTGTTGACCAAGCGAGCAGCTGAAGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCTGAAGAGGTTAATGTTGCAGAGAAATTGGCAATGCACATAGCAGATGTTGCTGACACAGACAAGTTCAAAGCTGAGCATGATGTCTCTTGCAAAATATCTTTCATAATGACATTATTGGATAATTTGATCCCACAAGGGCATCATGTGCTTATTTTCTCTCAAACTCGCAAGATGCTTAATTTTATTCAGGAATCTTTATTGTCCAAAGGTTATGAATTTTTAAGAATTGATGGAACAACAAAAGCCAGTGACAGAATAAGGATTGTTAATGATTTCCAAGAAGGTGGTGTGGCTCCCATATTTCTTTTGACATCTCAAGTTGGTGGTTTAGGGCTAACCCTTACTAGGGCAGATCGTGTGATTGTGGTTGATCCTGCTTGGAACCCAAGTACGGATAACCAAAGTGTTGATCGTGCATATCGTATTGGTCAAAAGAAAAATGTTCTTGTTTATAGACTAATGACATGTGGAACTGTTGAAGAAAAAATATACAGGAAGCAGGTATATAAGGGGGGGTTGTTTAAAACAGCAACAGAGCATAAAGAACAGATTCGGTACTTCAGCCAGCAGGATCTCAGAGAGCTTTTTAGTCTCCCAAAAGAGGGCTTTGATGTATCTGTTACTCAGCAGCAATTAGATGAGGAGCATGATTGCAAAGATACAATGGATGATTCTTTTAAAGCACACATAGAGTTTCTGAAACGTCAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTCTCTAAAACAGCATCAGTTCAAGATGCACCTGAGGATCATGAAGTGACAAGGAATCAAGGGACTAGATATGTTGGAACTTCAGCATCTACTTCTTCCATCGAACGTATTGCTGATGGAGCTGAGTTTGCTTTTAATCCAAAGGAAGTTAAATTGAGCAAACAAGGTTCTTCCCCAAGTAGTGGTGGTAAATTGACTGAGTCTGAAATCAGGGATAAAATCAAACGGATTTCTCAAACACTCACAAATAAGGCGATGATTTCTAGATTACCTGATGGGGGAGAAAAACTGCAGCTGCGGCTTGCCGAACTGAATTCAGAGCTTGCCAAATTGAAGATGGAGGAGAGAACTGAAGTTGATTTGGATGATATAACCGGGGAATTTCAAAGGGTATTGAAAGTTTAG 3039 0.4182 MANKSGKKPLSLNDSHYRFLQDLSAPPRPSSKLSDKSSTITLEGRRRQQGKAFSKDSKSEDDSIPQFSAITDFDSPIEQRSAEDERPIKIEGRRRLCKVLPKENSNDQGDNIPQSQELTDFDTHKEGKMTKVKVEGRRRLCKVSYSDNDNADKTLALDEPDVSDLVDFDSPPLTSKNVIEIDEGRGRNEIRDILDELSSKFDILSIERQRVPKSVQTIEDSSALGRGEDTVEDQGVDYASADSSFSPQQDPCATKSAGGSFEHVEDDSDDSVELLDHFDSESVSCITMRGPNYTYKLPGKIAKMLYPHQRDGLKWLWSLHCQGKGGILGDDMGLGKTMQMCGFLAGLFHSRLIRRALVVAPKTLLPHWIKELSAVGLSEKTREYFGTCSKAREYELQYILQDKGILLTTYDIVRNNSKSLRGSYLSDDEESEDSPIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIVISGTPLQNNLKELWALFNFCCPELLGDKKWFKERFESAILRGNDKKASDREKRVGSFVAKELRDRIQPYFLRRLKSEVFNQDDKNTTAKLSQKQEIIVWLRLTSVQRHLYEAFLRSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVNVAEKLAMHIADVADTDKFKAEHDVSCKISFIMTLLDNLIPQGHHVLIFSQTRKMLNFIQESLLSKGYEFLRIDGTTKASDRIRIVNDFQEGGVAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKNVLVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQQQLDEEHDCKDTMDDSFKAHIEFLKRQGIAGVSHHSLLFSKTASVQDAPEDHEVTRNQGTRYVGTSASTSSIERIADGAEFAFNPKEVKLSKQGSSPSSGGKLTESEIRDKIKRISQTLTNKAMISRLPDGGEKLQLRLAELNSELAKLKMEERTEVDLDDITGEFQRVLKV 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0416 1012 Pfam Helicase conserved C-terminal domain 662 774 IPR001650 -
Dere03g0416 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 558 845 IPR027417 -
Dere03g0416 1012 CDD SF2_C_SNF 654 785 - -
Dere03g0416 1012 FunFam Protein CHROMATIN REMODELING 24 284 562 - -
Dere03g0416 1012 PANTHER SNF2/RAD54 FAMILY MEMBER 129 992 - -
Dere03g0416 1012 MobiDBLite consensus disorder prediction 241 255 - -
Dere03g0416 1012 Gene3D - 284 563 IPR038718 -
Dere03g0416 1012 SMART ultradead3 300 503 IPR014001 -
Dere03g0416 1012 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 665 824 IPR001650 -
Dere03g0416 1012 MobiDBLite consensus disorder prediction 1 90 - -
Dere03g0416 1012 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 317 492 IPR014001 -
Dere03g0416 1012 SMART helicmild6 691 774 IPR001650 -
Dere03g0416 1012 Gene3D - 564 863 IPR027417 -
Dere03g0416 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 542 IPR027417 -
Dere03g0416 1012 Coils Coil 972 992 - -
Dere03g0416 1012 Pfam SNF2-related domain 308 612 IPR000330 GO:0005524|GO:0140658
Dere03g0416 1012 MobiDBLite consensus disorder prediction 48 62 - -
Dere03g0416 1012 MobiDBLite consensus disorder prediction 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0416 Dere-ChrDere03 7955273 7964218 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0416 305 828 RAD5 or RAD16-like Gene Family AT1G02670 24.694 5.22e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere03g0416 SNF2_N 2.7e-48 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0416 03 7955273 7964218 Dere03g0416 03 7955273 7964218 ECH