Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0404 ATGGAAGATGAGAGTTCTAGAGATGACAAGAATAATAATAATAATTTGCCTAATGGTCCCAGCACAGGCAGCCCAGAAAGCCCATGCTTTAAGTCCACATCAAACAAAGAACAAGATCGCTTCCTCCCCATTGCGAATGTTGGAAGAATCATGAAGAAAGGGATCCCAGGAAATGGAAAAATCTCAAAGGACGCTAAAGAGACTGTTCAAGAATGTGTGTCTGAGTTCATCAGTTTTGTGACTGGGGAAGCCTCTGATAAATGCCAAAGAGAGAAAAGAAAGACCATCAATGGAGACGACATCATATGGGCCATCACGACCTTAGGGTTTGAGGACTATGTGGACCCTTTGAAAACCTATCTTCAGAAATATAGAGAGATAGAAGGAGAGAAGCTTAACGTTCCCAAGCAACAACGTTCTGATCATCAACAAAGGCAACATCATCATCAACAGCAACAACATCAAAATAGTAATACTAATAATTATAATAATAATAATTTACCCTTAAATAATAGTGTATATTCTTCAACAAGTCTCATTTCTCAGCCTCCTCCTTATGTGGCCACGGATCAGCCATTTTCCTTACCATTCTCCCAAAATTCAATTCAGAAACAATTACAGCCCCAAGACAATATCGATTCGGTGGGGCATTGGTAA 657 0.3957 MEDESSRDDKNNNNNLPNGPSTGSPESPCFKSTSNKEQDRFLPIANVGRIMKKGIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKTYLQKYREIEGEKLNVPKQQRSDHQQRQHHHQQQQHQNSNTNNYNNNNLPLNNSVYSSTSLISQPPPYVATDQPFSLPFSQNSIQKQLQPQDNIDSVGHW 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0404 218 ProSitePatterns NF-YB/HAP3 subunit signature. 72 88 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dere03g0404 218 MobiDBLite consensus disorder prediction 134 148 - -
Dere03g0404 218 MobiDBLite consensus disorder prediction 150 176 - -
Dere03g0404 218 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Dere03g0404 218 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Dere03g0404 218 PRINTS CCAAT-binding transcription factor subunit A signature 107 125 - -
Dere03g0404 218 MobiDBLite consensus disorder prediction 134 176 - -
Dere03g0404 218 MobiDBLite consensus disorder prediction 1 38 - -
Dere03g0404 218 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 41 105 IPR003958 -
Dere03g0404 218 FunFam Nuclear transcription factor Y subunit B-3 30 156 - -
Dere03g0404 218 MobiDBLite consensus disorder prediction 11 38 - -
Dere03g0404 218 SUPERFAMILY Histone-fold 38 161 IPR009072 GO:0046982
Dere03g0404 218 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 164 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dere03g0404 218 Gene3D Histone, subunit A 28 167 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0404 Dere-ChrDere03 7782349 7783005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0404 1 218 CCAAT-HAP3 Transcription Factor Family AT2G13570 60.435 5.69e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dere03g0404 CBFD_NFYB_HMF 1.9e-27 CL0012