Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0388 ATGAACGAAGCTCAAACCGCTCCTCCTTTATTCAGATGCCCCATCAGTCTAGACTTGTTCGAAGATCCTGTGACTTTATGCACAGGTCAGACCTATGACAGGTCAAGCATAGAGAAATGGCTGGCTTTGGGTAATCTCACGTGCCCTGTCACTATGCAGAAGCTTCATGATTTGTCCATCGTTCCCAATCACACTCTTCGCCATTTGATCCATCAGTGGCATGAATTGGGTCCCCAGTTTGATCCTTCCTCTGCTTCACCCATTGATTCTTTGGCTTCTGTGAAACACACCCTTCAATCTCATGAATCCGCCTTAGAAAACAGGTTCCAAGCACTTGAGAAAATCACTGCCTTATCTGATGATTATTGTTACTTCAAAAGATCTTGTTTTCTTCAACTGGGTTTCTTGCCACTTCTTTTGGAACTAGTTTTTGCAGAAGTAGAAACCCAAAACCCCATTGATCACACTCAGATGGAGTTCATAGAGCTGGCACTTTCTTGTGTTCTTAAATTGCTTCCCCTTGGCTATTTGGAGCCCTTAAACATGCTCAAAGAAGAAGCTAGACTTGAAAATTTTCTGTTCTTATTTGAGAATGGAACCAACACTATAAAGACTAGTCTGTGTCATGTTGTAGATTCAGCAGCATCATCATCACAAGAGCTAAGTTCTATGCTTGGAAGCTCTCAGAAACTACTCCACGAAATCCTCTTCCTTCTGCTTCTTCTTCCCCAACACTGCGAGGCTTCCATGGCTGCAATCAAAGCCATATCGGCATTATGTTCCTCTGAATCAAACAAGCAGAACTTGATAAGAGCAGAAGCAATAGACAGGATCATAATGCAAATATCAGGTTCAGATCGGAGAAGAGAAGAGAACTGGGCTCCATTGGGATTGTCAATAGTTGATAAACTTGTGATGCTAGAGAGTGGTAAAGAGGCACTAGTGAAAAGCCCAAACAGTATTAAAGCTCTGGTGAAGATGGTTTTCAGTTTCAGGGAAAGTGATGAAGAGTGTAGCGAGAGTGCTGTTGGGTTGCTTCTGAGAATCTGTGGTGATGAGTCCAAGAGTGGGAGTGAAGAAGCCATTGAAGGTGGACTTGTGACTCAGCTTCTGTTGCTTCTGCAAAGCCAATGTAGCAACACGACAAAAACGAAGGCAAGAACGCTGCTCAAGCTGGTAACATGCAGGTGGGGCTGA 1197 0.4361 MNEAQTAPPLFRCPISLDLFEDPVTLCTGQTYDRSSIEKWLALGNLTCPVTMQKLHDLSIVPNHTLRHLIHQWHELGPQFDPSSASPIDSLASVKHTLQSHESALENRFQALEKITALSDDYCYFKRSCFLQLGFLPLLLELVFAEVETQNPIDHTQMEFIELALSCVLKLLPLGYLEPLNMLKEEARLENFLFLFENGTNTIKTSLCHVVDSAASSSQELSSMLGSSQKLLHEILFLLLLLPQHCEASMAAIKAISALCSSESNKQNLIRAEAIDRIIMQISGSDRRREENWAPLGLSIVDKLVMLESGKEALVKSPNSIKALVKMVFSFRESDEECSESAVGLLLRICGDESKSGSEEAIEGGLVTQLLLLLQSQCSNTTKTKARTLLKLVTCRWG 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0388 398 Gene3D - 95 396 IPR011989 -
Dere03g0388 398 PANTHER WDSAM1 PROTEIN 6 397 IPR045185 GO:0061630
Dere03g0388 398 FunFam RING-type E3 ubiquitin transferase 7 77 - -
Dere03g0388 398 CDD RING-Ubox_PUB 8 55 IPR045210 -
Dere03g0388 398 SUPERFAMILY RING/U-box 6 75 - -
Dere03g0388 398 SMART Ubox_2 10 73 IPR003613 GO:0004842|GO:0016567
Dere03g0388 398 Pfam U-box domain 7 74 IPR003613 GO:0004842|GO:0016567
Dere03g0388 398 SUPERFAMILY ARM repeat 97 391 IPR016024 -
Dere03g0388 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
Dere03g0388 398 ProSiteProfiles U-box domain profile. 6 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0388 Dere-ChrDere03 7567347 7568543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0388 8 379 U-box Gene Family AT3G19380 32.316 2.62e-41 149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0388 03 7567347 7568543 Dere03g0388 03 7567347 7568543 ECH