LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere03g0380	ATGCCCGCTTGGTGGGGAAGAAAATCCAGCAAGAAGAAGGAGCAGCAGCGCCAAAAGCAGGAACCGCATGCTGCTACCGGCCATCAATTTAATTTCGTCAAATCCCCCATTAGAAATGGTGCCAAGAAAGAAAAAGACAAACCCAACAGCTTTGATGAGGTTTCCGCCATGAATTTCTCTCGCAATTCTCCCAGGGCCAGTAGGGATTTCACTTCTGTGCCTTTTGGGGTTGGTGGCTCATCTTCCGGATTTTCTTGTTGCGATTCCGATGGGGGCGAGAAGAGAGGCCATCCATTGCCTCGGCCCTCCATTTCATCGACCCAGAGCTTTGAGAAGGATCAAGTCGGTGGCTTGGGATCTGCCTCGATCTCTGGTTCTAGCATCAGCTCTACTGGCTCCTACGATGATCATTCAATTTCTCAGTCTAATGGTAGCAGAGGGCATGGTGATTTGAAGTTCAATGTAAGGTCAAAAAGCCCAGGTCCTGGGTCAAGAGGACCTAACAGCCCTACATCACCTCTTCATCCAAGGTTGCTTGTTTTGAGTCTTGATTCACCTACAGGCAAGCAAGATGATGGAAGGAGTCAATGCCATCCATTGCCTCTTCCACCAGGTTCTCCTACTAGTCCTTCTGCTCTCTCCAATGCACGAGCAACTGGAGTGCAAGATTACACCGCCAATAATCTGTCCAAGTGGAAGAAAGGAAAGCTTTTAGGACGGGGAACATTTGGGCATGTTTACCTGGGATTTAATAGTGAAAGTGGACAAATGTGTGCAATAAAAGAAGTTAGGCTCGTCTCTGATGATCAGACATCAAAAGAGAGTCTCAAACAACTTAATCAGGAGATAAATTTACTTAGTCAACTTTCACATCAGAACATTGTTCAATACTACGGGAGTGAATTGGGAGAAGAAGCACTTTCAGTTTATTTGGAATATGTATCTGGTGGTTCTATCCATAAATTACTTCAGGAATATGGTTCATTTAAGGAACCAGTTATTCAAAATTATACCAGGCAGATAGTCTCTGGACTTGCCTATCTGCATGGAAGAAACACTGTACACAGGGATATTAAAGGAGCAAACATACTAGTTGATCCTAATGGTGAAATAAAGCTTGCAGACTTTGGAATGGCTAAACATATAAATTCTTCTGCCTCAATGCTGTCTTTCAAGGGAAGTCCATACTGGATGGCACCTGAGGTTGTAATGAACATAAATGGCTACAGTCTTGCTGTGGATATATGGAGCTTGGGATGCACAATCCTGGAAATGGCAACATCAAAGCCTCCATGGAGTCAGTATGAAGGGGTAGCTGCAATATTCAAAATTGGAAACAGTAAAGATATGCCTGAAATTCCTGAGCATCTTTCAAATGATGCAAAGGGTTTTATAAAGTTATGCTTACAAAGAGATCCGTCAGCTCGCCCCTCAGCTCAGCAGTTACTTGACCACCCATTTATTCGAGATCAGTCAGCAACAAGAGCTGCAAATGTCAACATAACCAGGGATGCTTTTCCCTACATGTTTGATGGAAGCCGGACACCGCCCGTTTTAGAGCTTCATTCTAATAGAACAAGTATAACATCACTTGATGGTGATTATGCAACAAAGCCAGCTGTTGCTACTTCACGAGCGTTAAGGAGCCCAAGAGACAACACCAGAACAATTACATCATTACCAGTATCTCCCTGTTCAAGTCCTTTGCGACAGTATGGGCCGGCACACAAGAGCTGTTTCCTTTCTCCTCCTCATCCAGCTTTCACCATGATGGGGCAAAATAACTACACTTTGAATGATTTCTCATCATATCCAATGAGATCAAATGCCACATTCACCCTTGATCCTTGGCATGAAACATCTCTATACAAAGCTCGTACACCAGGTGGATCCCCAAGATCGAGACTCATTTGA	1914	0.441	MPAWWGRKSSKKKEQQRQKQEPHAATGHQFNFVKSPIRNGAKKEKDKPNSFDEVSAMNFSRNSPRASRDFTSVPFGVGGSSSGFSCCDSDGGEKRGHPLPRPSISSTQSFEKDQVGGLGSASISGSSISSTGSYDDHSISQSNGSRGHGDLKFNVRSKSPGPGSRGPNSPTSPLHPRLLVLSLDSPTGKQDDGRSQCHPLPLPPGSPTSPSALSNARATGVQDYTANNLSKWKKGKLLGRGTFGHVYLGFNSESGQMCAIKEVRLVSDDQTSKESLKQLNQEINLLSQLSHQNIVQYYGSELGEEALSVYLEYVSGGSIHKLLQEYGSFKEPVIQNYTRQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSASMLSFKGSPYWMAPEVVMNINGYSLAVDIWSLGCTILEMATSKPPWSQYEGVAAIFKIGNSKDMPEIPEHLSNDAKGFIKLCLQRDPSARPSAQQLLDHPFIRDQSATRAANVNITRDAFPYMFDGSRTPPVLELHSNRTSITSLDGDYATKPAVATSRALRSPRDNTRTITSLPVSPCSSPLRQYGPAHKSCFLSPPHPAFTMMGQNNYTLNDFSSYPMRSNATFTLDPWHETSLYKARTPGGSPRSRLI	637

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere03g0380	637	SUPERFAMILY	Protein kinase-like (PK-like)	229	551	IPR011009	-
	Dere03g0380	637	Pfam	Protein kinase domain	233	488	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere03g0380	637	CDD	STKc_MEKK1_plant	231	488	-	-
	Dere03g0380	637	MobiDBLite	consensus disorder prediction	53	87	-	-
	Dere03g0380	637	Gene3D	Transferase(Phosphotransferase) domain 1	229	508	-	-
	Dere03g0380	637	MobiDBLite	consensus disorder prediction	101	148	-	-
	Dere03g0380	637	ProSiteProfiles	Protein kinase domain profile.	232	488	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere03g0380	637	FunFam	Mitogen-activated protein kinase kinase kinase	230	512	-	-
	Dere03g0380	637	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	27	496	-	-
	Dere03g0380	637	ProSitePatterns	Protein kinases ATP-binding region signature.	238	261	IPR017441	GO:0005524
	Dere03g0380	637	SMART	serkin_6	232	488	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere03g0380	637	MobiDBLite	consensus disorder prediction	1	218	-	-
	Dere03g0380	637	MobiDBLite	consensus disorder prediction	7	21	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere03g0380	Dere-ChrDere03	7515909	7521297	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere03g0380	1	551	MAP Kinase Kinase Kinase	AT1G53570	59.680	0.0	578

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Dere03g0380		Pkinase	4.6e-74	CL0016