Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0367 ATGGATACCAACCAGAATCAGCCCGCATTCACCAATGTTAACAATAACACCCCTTGGAATATCAATCTGGAGAATATGGCTCCTGCTTGGCCAATAACCTACCCTCTTCAAATCCCATCCTCGTCCTCTTCTTCATCTCCAGGTTTCCTCATGAGTGACATGTTCGGCATTTCCTTGGAACAAGAGGATCATGAAGGAGATCATGAGGAAGAAGAAGAGGAGCTCGGGGCCATGAAGGAGATGATGTACAAGATCGCCGCTATGCAGCCCGTCGACATCGACCCTGCCACCATCCGCAAGCCCAAGCGGCGCAACGTCCGCATCAGCGACGACCCCCAGAGCGTGGCCGCCCGCCACCGCCGCGAGAGGATCAGCGAGAAAATCCGAATCCTCCAGAGACTCGTCCCCGGCGGAACCAAGCTCGACACCGCCTCCATGCTGGACGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATCAGGTTGCTCCAATCGCCACAGCTACAGCAATGCAACAACTTTAATGGAATTGGAACTAGTACTACTGCTACTACTCTCGGAGTAATTAACAATAGTGCTACAAGTGATTATTGGCCTTCTGCACCAAATATACTACCCACCTCCACCACCACCACCACGGCGGGCGGAATGGGGTTCAACGCCGGTGATAGCTCCTCCGGGTTTAACCATGAGTCTGAGCCCAGTGTCATGATGTTGAAGAAAGCCCTAAAGGGGTCAGAGAAAGTGAACTTACAAGGCCAAACTTAA 771 0.5175 MDTNQNQPAFTNVNNNTPWNINLENMAPAWPITYPLQIPSSSSSSSPGFLMSDMFGISLEQEDHEGDHEEEEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKLDTASMLDEAIRYVKFLKRQIRLLQSPQLQQCNNFNGIGTSTTATTLGVINNSATSDYWPSAPNILPTSTTTTTAGGMGFNAGDSSSGFNHESEPSVMMLKKALKGSEKVNLQGQT 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0367 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 113 168 IPR036638 GO:0046983
Dere03g0367 256 Gene3D - 111 176 IPR036638 GO:0046983
Dere03g0367 256 Coils Coil 61 81 - -
Dere03g0367 256 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 22 202 IPR045843 GO:0003700|GO:0006355
Dere03g0367 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 108 157 IPR011598 GO:0046983
Dere03g0367 256 SMART finulus 114 163 IPR011598 GO:0046983
Dere03g0367 256 Pfam Helix-loop-helix DNA-binding domain 118 157 IPR011598 GO:0046983
Dere03g0367 256 FunFam BHLH transcription factor 111 174 - -
Dere03g0367 256 CDD bHLH_AtIND_like 109 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0367 Dere-ChrDere03 7330836 7332151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0367 77 165 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 82.022 6.21e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere03g0367 HLH 3.4e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0367 03 7330836 7332151 Dere03g0367 03 7330836 7332151 ECH