Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0366 ATGGGCCACAACCTAGAGAATAGGTATTGGGCCAGAGAAGTGAAGTCTCTTAAGCTTTTTCCCGAAGTCTCCAAAATGTTTGGTGTGCGTGGTTCGACCGGAATTGTTTCTGATATTGTTTTCCAGCTTCGTCAAACTTTATCGCTTCGTGGTGTACGTGTTCAAAATATAAACATTGGAGGTGGTGTTGGAGGGGAGATTCCAGACAATAAGCGCCTTCAGTATGCCCTACAGCACATACATGGAATTGGCCGTTCCAAAGCTCACCATATTGTCTGTGAGCTTGGGGTTGAGAACAAATACGTCAAGGACCTGAGTAAAAGAGAGTTATATTCCCTTCGTGAATTACTCTCCAAGTACATGCTTGGAAATGACTTGAAAAGGTGTGTTCAGAAAGATGTGGAAAGGTTAATGAGTATTCAGTGCTACAGGGGATTCAGACATATGGATGGTTTACCCTGCAGAGGACAGCGCACACATACAAATGCTCGGACCAGGAGGAGTAGGCCAGGTTTTGGTGCATCAAAATGA 531 0.4444 MGHNLENRYWAREVKSLKLFPEVSKMFGVRGSTGIVSDIVFQLRQTLSLRGVRVQNINIGGGVGGEIPDNKRLQYALQHIHGIGRSKAHHIVCELGVENKYVKDLSKRELYSLRELLSKYMLGNDLKRCVQKDVERLMSIQCYRGFRHMDGLPCRGQRTHTNARTRRSRPGFGASK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0366 176 Gene3D - 63 127 - -
Dere03g0366 176 SUPERFAMILY S13-like H2TH domain 64 168 IPR010979 GO:0003676
Dere03g0366 176 Pfam Ribosomal protein S13/S18 64 165 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere03g0366 176 Hamap 30S ribosomal protein S13 [rpsM]. 51 175 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere03g0366 176 FunFam Ribosomal protein S13 128 167 - -
Dere03g0366 176 FunFam 30S ribosomal protein S13 63 128 - -
Dere03g0366 176 ProSitePatterns Ribosomal protein S13 signature. 144 157 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere03g0366 176 Gene3D 30s ribosomal protein s13, domain 2 128 167 IPR027437 -
Dere03g0366 176 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 48 167 - -
Dere03g0366 176 ProSiteProfiles Ribosomal protein S13 family profile. 63 168 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere03g0366 176 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0366 Dere-ChrDere03 7315641 7317264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0366 52 164 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 29.927 7.59e-08 47.8