Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0361 ATGGCTCCGGGCACCTCCTCGGCGGCGGCTCAGAGGCTCATCGGCTTCAGCCGCAGAACACAAGCACCTCGCCAGCCCTCGCCGCCGGCCTCTCATGCGGCGAAGAAGTATAAGTCTCTGACCGAGATAATGGCAAAAGCCCGATATGCTGTCATTGAGCGGGAGGATTACAGCGACGTGACCTGTGACCAATGCGGCTCTGGTGAACGACCGGACGAGCTGCTTCTCTGTGACAAATGCGATAAAGGCTTCCATATGAAATGCGTGAGACCCATTGTTGTTAGAGTTCCAATTGGATCATGGCTTTGCCCTAAGTGTTCGGGAGAGAAGAGAGTAAGAAGTTTCTCTCAGAAGAAGATAATTGATTTTTTCCGGATTCAGAAGAGTACTGATTTTAAAAACAAATGCTCTTCTGCCCAAGATGCCAAGAAGCGTAAAAGGCGTACATCACTGGTTTTGCAAAAGAAACGGAGGAGATTATTGCCATTTATTCCTACAGAAAATCCTTCCCAAAGATTGAAACAGATGGGTTCCCTTGCTTCTGCTTTAACTGCATTGCATATGGAATTCAGTGATGATCTCACATACTTGCCTCAGATGGCTGCTAGGTCCACAAATCATGCCAATTTTGAAGATGGTGGCATGCAGGTTCTTTCCAGGGAAGATACTGAGACCTTGGAACAATGCAGAGCAATGTGTAGAAGAGGCGAATGCCCTCCCCTTATGGTTGTTTATGATTCACGTGAAGGGTATACAGTAGAGGCAGATGGCCCCATCAAGGATATGACATTCATTGCTGAATACACAGGCGATGTGGATTACATTAAGAACCGTGAACATGATGATTGTGACAGTCTGATGACCCTTCTTCTAGCAACAGATCCTTCTAAAAGTCTTGTCATCTGCCCTGATAAACGTGGTAACATTGCCCGCTTCATAAATGGCATCAACAATCATACTCAGGAAGGTAGGAAGAAGCAGAACTGTAAATGTGTGAGATACAGTGTTAATGGTGAATGCAGGGTGTTTTTGGTTGCAACTCGTGATATTTCTAAAGGGGAGAGGCTTTATTATGATTATAATGGTTATGAGCATGAATACCCTACTCATCATTTTGTCTAA 1122 0.4528 MAPGTSSAAAQRLIGFSRRTQAPRQPSPPASHAAKKYKSLTEIMAKARYAVIEREDYSDVTCDQCGSGERPDELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPKCSGEKRVRSFSQKKIIDFFRIQKSTDFKNKCSSAQDAKKRKRRTSLVLQKKRRRLLPFIPTENPSQRLKQMGSLASALTALHMEFSDDLTYLPQMAARSTNHANFEDGGMQVLSREDTETLEQCRAMCRRGECPPLMVVYDSREGYTVEADGPIKDMTFIAEYTGDVDYIKNREHDDCDSLMTLLLATDPSKSLVICPDKRGNIARFINGINNHTQEGRKKQNCKCVRYSVNGECRVFLVATRDISKGERLYYDYNGYEHEYPTHHFV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0361 373 ProSiteProfiles SET domain profile. 239 361 IPR001214 GO:0005515
Dere03g0361 373 SUPERFAMILY SET domain 228 361 IPR046341 -
Dere03g0361 373 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 134 371 - -
Dere03g0361 373 Pfam PHD-finger 62 107 IPR019787 -
Dere03g0361 373 MobiDBLite consensus disorder prediction 1 27 - -
Dere03g0361 373 FunFam Histone-lysine N-methyltransferase ATXR5 145 373 - -
Dere03g0361 373 CDD SET_ATXR5_6-like 236 373 - -
Dere03g0361 373 SMART PHD_3 61 107 IPR001965 -
Dere03g0361 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 122 IPR013083 -
Dere03g0361 373 ProSitePatterns Zinc finger PHD-type signature. 62 106 IPR019786 -
Dere03g0361 373 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Dere03g0361 373 CDD PHD_RSF1 62 106 - -
Dere03g0361 373 Gene3D SET domain 144 373 IPR046341 -
Dere03g0361 373 Pfam SET domain 255 361 IPR001214 GO:0005515
Dere03g0361 373 SUPERFAMILY FYVE/PHD zinc finger 26 107 IPR011011 -
Dere03g0361 373 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0361 Dere-ChrDere03 7284495 7288137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0361 57 112 C2H2 Transcription Factor Family AT3G01460 39.286 7.06e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere03g0361 SET 1.5e-07 No_clan