Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0358 ATGCTGAGTCCTGATGAAGGAGATATTGAAGATGTGTTCTTCGACTCAGCCGATTGTCTGTCACCTCAAGAGTCTGATTTAGGGTCCAACCAGTTTGATTATGACATTTGGTTGAATGAGCCTCAGAGTGTGAAGGAAAGACGAGAACGTTTTCTAGAGGGAATGGGTTTATGTGATATTTCTTCAAAGGCCTCGTCAAAGGCCTTGGTACTAGAGAGAATTAGGGACACCAATGGAGCAGTCTCAAATATACCTGAGAAAGCAACTTCTGAAGCAAACGTCCTTTCTGATGAAATCAAAGGGTGTCCTAAAGATATAGTTGATGTAACAAGTTTACATGAACATAGACACACAGAAGCTGAGGTCCAAGAAGGACATGGGGACCTTGATATGGGTAAAAAGAAGAAGAAAAACTGGTGGAAGCAATTTGTGAACAGCAGGAAAGTAGGTGGTGGAGAGAAAATCAGATCAAAACTCAATAAAGGGCCAAATAAAACTTGTAGGATAAGTGTGAGGCAGAATAAAAAGAGGTGGATGGAGTTCAGTGGGTTATATATTGGACAAGATATCACAGCTCACAAAGGCATTATATGGACTATGAAATTTAGTCCCAATGGAAAGTATCTTGCAACCGGAGGTGAAGATGGAGTTGTACGAATATGGCGTGTTGTATTACAGGATACATCTAGTGATTGTTTCAATTCAGAAGACAGTCTTGTTAGCCAAGTGAAACAAGACATGTTCTGTTCTCGGAAGAAACAGTCAAGGAGTCAAAACTCCCTTGTCCTTCCAAGCAAGGTTTTTCAAATTGAGGAATCTCCACTGCAAGAATTCTTTGGTCATTCCAGTGATGTCTTGGATTTGGCATGGTCTAATTCAGATATTCTCCTTTCATCTTCCATGGATAAAACCGTCCGTTTGTGGCAAATTGGTTGTAATCAATGCTTAAGTATTTTCCGTCACAATGACTATGTGACATGCATTCAAGTGAATCCAGTTGATGAAAATTACTTCATCAGTGGGTCCATCGATGGTAAAGTACGAGTATGGGGAGTATATGAAGAGCGAGTTGTTGATTGGGCAGATATACATGATGTGATAACTGCTATAAGTTACCAGCCAGATGGGAAAGGATTTGTAGTTGGCTCACTTTCAGGCACTTGCCGCTTTTATGTTGCTTCAGGCAAACATTTCCGGCTTGATTCACAGATTCGTGTTGTTGGAAAGAAGAGGTCAGGTGGCAACAAAATTACTGGCATTCAGTTTTCCCAGGAGCAACATCAGAAAGTTTTGATCACATCAGAAGATTCCAAACTTCGCTTATTGGAAGGGACTGATGTTGTCCAGAAATACAAAGGTCTTCCAAAGTCAAGAAGCCAGATGTCTGGTTCATTTTCTTCAGGTGGAAGACACATAATTTCAGTCGGTGAGGACTCTCGTGTGTATATTTGGAACATAAGTGAGTCAGAAAATTCATCACCAAAACACACGAAATCTCATCGATCCTGTGAGTACTTTTTCTCTGAGGGTGTTACAGTAGCAATACCATGGTCAGGCATGAGTGCAGATCAAATGGCCTCTGGTTTTGCTCACTGTTCTTCAGAATCTCAACACCAAATGCGTAAAGATACAGAATGTTTTTCAGGGGGTAATTGGTTCTCCATCGATAGCACATGTCGAGGTTCTATGACATGGACATGGCCCGAAGAGAAGCTTCCTGTCTGGGATTCACCTTCTGCAGAAGAAGGATATTGCCACCACCATCAGAAATGTCCCAAGGATCCTTGGGGGGTGTCTCTTGTAGCAGCTGGTTGTGATGGAACTATAAAGACATTCCACAACTTTGGATTGCCTGTTAGGCTTTAG 1866 0.4164 MLSPDEGDIEDVFFDSADCLSPQESDLGSNQFDYDIWLNEPQSVKERRERFLEGMGLCDISSKASSKALVLERIRDTNGAVSNIPEKATSEANVLSDEIKGCPKDIVDVTSLHEHRHTEAEVQEGHGDLDMGKKKKKNWWKQFVNSRKVGGGEKIRSKLNKGPNKTCRISVRQNKKRWMEFSGLYIGQDITAHKGIIWTMKFSPNGKYLATGGEDGVVRIWRVVLQDTSSDCFNSEDSLVSQVKQDMFCSRKKQSRSQNSLVLPSKVFQIEESPLQEFFGHSSDVLDLAWSNSDILLSSSMDKTVRLWQIGCNQCLSIFRHNDYVTCIQVNPVDENYFISGSIDGKVRVWGVYEERVVDWADIHDVITAISYQPDGKGFVVGSLSGTCRFYVASGKHFRLDSQIRVVGKKRSGGNKITGIQFSQEQHQKVLITSEDSKLRLLEGTDVVQKYKGLPKSRSQMSGSFSSGGRHIISVGEDSRVYIWNISESENSSPKHTKSHRSCEYFFSEGVTVAIPWSGMSADQMASGFAHCSSESQHQMRKDTECFSGGNWFSIDSTCRGSMTWTWPEEKLPVWDSPSAEEGYCHHHQKCPKDPWGVSLVAAGCDGTIKTFHNFGLPVRL 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0358 621 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 278 310 - -
Dere03g0358 621 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 350 - -
Dere03g0358 621 Pfam WD domain, G-beta repeat 314 350 IPR001680 GO:0005515
Dere03g0358 621 Pfam WD domain, G-beta repeat 273 308 IPR001680 GO:0005515
Dere03g0358 621 Pfam WD domain, G-beta repeat 190 221 IPR001680 GO:0005515
Dere03g0358 621 SUPERFAMILY WD40 repeat-like 188 610 IPR036322 GO:0005515
Dere03g0358 621 PRINTS G protein beta WD-40 repeat signature 338 352 IPR020472 -
Dere03g0358 621 PRINTS G protein beta WD-40 repeat signature 209 223 IPR020472 -
Dere03g0358 621 PRINTS G protein beta WD-40 repeat signature 296 310 IPR020472 -
Dere03g0358 621 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 350 IPR001680 GO:0005515
Dere03g0358 621 ProSiteProfiles Trp-Asp (WD) repeats profile. 464 494 IPR001680 GO:0005515
Dere03g0358 621 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 310 IPR001680 GO:0005515
Dere03g0358 621 FunFam WD repeat-containing protein 44 174 517 - -
Dere03g0358 621 ProSiteProfiles Trp-Asp (WD) repeats profile. 190 223 IPR001680 GO:0005515
Dere03g0358 621 Gene3D - 180 524 IPR015943 GO:0005515
Dere03g0358 621 PANTHER WD REPEAT DOMAIN 44 66 618 IPR040324 -
Dere03g0358 621 SMART WD40_4 312 351 IPR001680 GO:0005515
Dere03g0358 621 SMART WD40_4 354 392 IPR001680 GO:0005515
Dere03g0358 621 SMART WD40_4 271 309 IPR001680 GO:0005515
Dere03g0358 621 SMART WD40_4 183 222 IPR001680 GO:0005515
Dere03g0358 621 SMART WD40_4 403 443 IPR001680 GO:0005515
Dere03g0358 621 SMART WD40_4 444 485 IPR001680 GO:0005515
Dere03g0358 621 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 190 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0358 Dere-ChrDere03 7269424 7272306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0358 275 482 U-box Gene Family AT2G33340 27.679 5.11e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0358 03 7269424 7272306 Dere03g0358 03 7269424 7272306 ECH