Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0356 ATGGGCAGAGACGATCTATACATCACGGTTCCAAGCTTCTTCCGGTGTCCGATATCCCTTGACGTTATGACATCTCCGGTGAGTCTCTGCACCGGCGTTACCTACGACCGTTCCAGCATCCAGCGCTGGCTTGACAACGGCAACAACACCTGCCCTGCCACCATGCAGGTCTTGCACACCAAAGAATTTGTTCCTAACCGTACTCTACAGAGGCTTATCCAGATCTGGTCTGACTCGGTTAGCCAACGAGTCGAGTCGGCCGACTCTCCGGCCACCAGAATAGTTCCTTCCCAGGATCAGGTCGTCGACGCTGTCAGAGACTTGGACTCCCACAGCGAGAAATGTCTGGATTCTCTAACAAGTGTTGTATATTTCCTTGAAAAATCTGAAGAGAATCGGGAATTCCTCGCGAGGTTAGAGGGATTCGTGCCCATGCTCGTTGATTTACTCGACAATGTCGATGGTGGCGTTGAAATTCTCGAGAAAGTTGTTAATGCTTTGGATTCGGTTCTCAAAAAAATCGAAGATCGCGAGCAATTAAAGAAATCGATGTTGAAGAACAACGGCAATTGCCTAGCTTCTCTGCTTCTCGTTCTGCAGCAAGGCTGCGCCGGTTCAAAAATCGGATCGATGAGGATTCTAAAAGTCATCGCCATGGACTCCGAGTCCAGGCTCATGATCGCCGAAAAGGAAGGTCTAATGTCCGAATTGCTTAAATCAATTGCTCTTGACAAAGACCCTGAGCTAATAGAAAACGGTTTGTCCTGTTTGGTTGCAATCTCAATGTCGAAACGGAACAAGTCGAAACTGGTCCAACTCGGCGCTATTAAGACACTCTCGCAATTACTCTCTGGCTCAAATTGGAGCGTTTCAGTAACTGAAAAAGTCCTGAAACTTCTCGAAACGGTGTCGTCGACCAAGGAAGGTAGGTCGGAGATTTGCGAGGACCCAACGTGCGTGCCGGCGGTATTGCAGAAGGTTCTGAAGGTATCTAGCATAGCGACAGAGCATGCGGTGATGATATTGTGGAGTGTATGTTATCTGTTTCGGGATCAGAAGGCGCAGGAAGCGGTGACAATGGCCAACGGTTTGACCAAGATTCTACTTCTGATGCAGAGCAATTGCTCGCCGGCGGTTAGGCAAATGTCCGCCGATTTGCTCAAGATTTTTCGGGTCAACTCGAAATCATGCCTTTCTTGCTACGACACTAAGACGACCCATATCATGCCCTTCTGA 1236 0.4879 MGRDDLYITVPSFFRCPISLDVMTSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNRTLQRLIQIWSDSVSQRVESADSPATRIVPSQDQVVDAVRDLDSHSEKCLDSLTSVVYFLEKSEENREFLARLEGFVPMLVDLLDNVDGGVEILEKVVNALDSVLKKIEDREQLKKSMLKNNGNCLASLLLVLQQGCAGSKIGSMRILKVIAMDSESRLMIAEKEGLMSELLKSIALDKDPELIENGLSCLVAISMSKRNKSKLVQLGAIKTLSQLLSGSNWSVSVTEKVLKLLETVSSTKEGRSEICEDPTCVPAVLQKVLKVSSIATEHAVMILWSVCYLFRDQKAQEAVTMANGLTKILLLMQSNCSPAVRQMSADLLKIFRVNSKSCLSCYDTKTTHIMPF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0356 411 SUPERFAMILY ARM repeat 68 393 IPR016024 -
Dere03g0356 411 SUPERFAMILY RING/U-box 4 79 - -
Dere03g0356 411 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Dere03g0356 411 Gene3D - 244 391 IPR011989 -
Dere03g0356 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 91 IPR013083 -
Dere03g0356 411 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Dere03g0356 411 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Dere03g0356 411 Gene3D - 92 238 IPR011989 -
Dere03g0356 411 PANTHER WDSAM1 PROTEIN 9 399 IPR045185 GO:0061630
Dere03g0356 411 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 141 170 IPR000225 GO:0005515
Dere03g0356 411 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Dere03g0356 411 CDD RING-Ubox_PUB 11 63 IPR045210 -
Dere03g0356 411 Coils Coil 157 177 - -
Dere03g0356 411 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 274 313 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0356 Dere-ChrDere03 7251112 7252347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0356 1 411 U-box Gene Family AT5G64660 54.717 2.39e-148 426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0356 03 7251112 7252347 Dere03g0356 03 7251112 7252347 ECH