Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0350 ATGACAGTTTCTCCTGTATATAATCCCCTTAACCTCTCTATATCTAATTCATCAACTACTCCAACTCCAACAACATCAACAAGAACAAACATGTATGCTTCTACTTCCTCTGCTTCTCAACTCTTCCATGATCTTCTTGGGGAATTCCACTCTAGAAGGTTACTACTCCATCACTCCCCACTTGACTCACCCAATCCACCATCTTCCTTAATCCCCCGCAGCAACAACAACTACACTGATTCCTACCTAGGAGACGGTAATTTTGATACAAATGTTATCATGGTACTGTCTGTTGTCCTGTGTGCTCTTGTCTGCTCACTGGGATTAAACACCATCATAAGATGTGCCTTAAGGTGTTCGAATATAGTCCTCAATGAATCCGACCCCAACAACCCTCCAGCTCGAGTGGCCAACACTGGAGTCAAAAAGAAAGCCTTGAAGACTTTCCCAACAGTGACATACTCTGCTGAGTTAAAGCTCCCAGGTTTGGACACAGAGTGCGTGATATGCCTCTCCGAGTTCAACAATGGCGATCGTGTTCGAATTCTGCCCAAGTGTAACCATGGCTTCCATGTTCGTTGCATTGACAAGTGGCTGAGCTCACATTCTTCTTGTCCTAAATGTAGACACTGCCTCATTGAGACTTGCCACAAGATCGTAGGTTCATCATCGCAACCATCTTGCCCAGAAACCACTGTGAGGATTGCACCCTTAGAACCAGAAGGTTTGGTACGTAACTATAGGGACACTTAG 753 0.4489 MTVSPVYNPLNLSISNSSTTPTPTTSTRTNMYASTSSASQLFHDLLGEFHSRRLLLHHSPLDSPNPPSSLIPRSNNNYTDSYLGDGNFDTNVIMVLSVVLCALVCSLGLNTIIRCALRCSNIVLNESDPNNPPARVANTGVKKKALKTFPTVTYSAELKLPGLDTECVICLSEFNNGDRVRILPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIETCHKIVGSSSQPSCPETTVRIAPLEPEGLVRNYRDT 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0350 250 ProSiteProfiles Zinc finger RING-type profile. 167 209 IPR001841 -
Dere03g0350 250 SMART ring_2 167 208 IPR001841 -
Dere03g0350 250 Pfam Ring finger domain 166 209 IPR001841 -
Dere03g0350 250 SUPERFAMILY RING/U-box 145 214 - -
Dere03g0350 250 FunFam RING-H2 finger protein ATL73 128 214 - -
Dere03g0350 250 PANTHER RING-H2 FINGER PROTEIN ATL78 45 243 IPR044602 GO:0016567|GO:0016740
Dere03g0350 250 MobiDBLite consensus disorder prediction 1 30 - -
Dere03g0350 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 214 IPR013083 -
Dere03g0350 250 CDD RING-H2_EL5-like 166 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0350 Dere-ChrDere03 7183101 7183853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0350 53 213 C3H Transcription Factor Family AT3G10910 44.643 1.80e-42 141