Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0336 ATGGCAGAAAATTCATGTTTACCGGGAAATTCCATGGAAGACCAGCACACGGTCTCTGATGGGTTCAAAGATGAACAGGCGGTAGTCTCAGGTGAAGAGGTTGGTGACCGGAATTTCACCAGTAGCCGGTGGCCTCCGGAAGAGACTATGGCTTTGCTCAAGATAAGGTCTGACATGGATGTTGCTTTCAGGGATACAACCCTCAAAGCTCAGCTTTGGGAACAAGTTTCGAGGAGATTAGAGGAGGTAGGATATAAAAGAAGCGCGAAGAAATGCAAGGAGAAGTTTGAAAACATTTACAAGTACCATAGAAGGACCAAGGAAGGTCGTATTGGCCGACCCAATGGCAAGGCTTATCGGTTCTTTGAGCAATTAGAGGCTCTTCTGATTCCACCTTCCCCTGAAAAGAATGAGGGACAAGTGGAAAACACAGCAAAAACTACAACCCTGATGGATTTGTCGAACGTCATTGAAGATGCAATGCCATGTTCCATTCGATTCCCTAGTGATCCCTCTAGTTCAACCACTTCCTGTTCGAGCAAAGAACCAGGGGAAAATACTCGAAAGAAGAGGAGGAAACTGAAAGGGGTTTTTGAGAGTTGGATGAACGAAATAGTAGAGAAGCAAGAGAAGCTTCAGAAGAACTTGATGGAGATGTTAGAAAAATGCGAACAAGATAGAATAGCGAGAGAGGAAGCATGGAAGATGCAAGAATTAGCTAGGATTAAGAAGGAGCGTGAGCTTTTAGCTCAAGAAAGATCAATTGCAGCAGCGAAAGATGCTGCAGTGCTTGCCCTTCTCAAAAAGTTCATAGAACGAGCAGGTCCATTACACTCGCCTGAGAACCCTCTTCCAAATGATAAAGATAAGGACAAGCAAGAAAATGATAATGCAGGCAGTAGTAGTGTTATTGAAAAGCAAGAATGTAGAAATAAAGGCAATGTTATACGGATGAATTCATCTTCCTCCAGATGGCCCAAAGATGAAGTAGAAGCTTTGATTAGATTGAGGACAAACCTTAAGGTGGACTATGAAGGAAATGGGCTTAAAGAACCTCTGTGGGAGGAGATATCCTGTGCCATGAAAAAGCTTGGGTACGATCGGAGTGCCAAGAGATGCAAAGAGAAATGGGAGAATATGAATAAATACTACAAGAGGATGAAGGAACAAAAGAAGAAAAAGCCCGAGGATTCTAAGACGTGTCATTACTTTAACCAGCTCAATGCTCTGTATAGTAGGGAAAAGCCTAATAAGGTGAACCAAGAAACCAATTCTGGTAAAGATCAATCACAACCTGAGGAGCCACCAATGCATATTATGGAAGGTCAGTCTCAGACATCATCTGAGGATGCCGACAGAGAGAAGAAGGATCACAGTAATGGAGGAGATGGTGGCAACTAA 1401 0.4325 MAENSCLPGNSMEDQHTVSDGFKDEQAVVSGEEVGDRNFTSSRWPPEETMALLKIRSDMDVAFRDTTLKAQLWEQVSRRLEEVGYKRSAKKCKEKFENIYKYHRRTKEGRIGRPNGKAYRFFEQLEALLIPPSPEKNEGQVENTAKTTTLMDLSNVIEDAMPCSIRFPSDPSSSTTSCSSKEPGENTRKKRRKLKGVFESWMNEIVEKQEKLQKNLMEMLEKCEQDRIAREEAWKMQELARIKKERELLAQERSIAAAKDAAVLALLKKFIERAGPLHSPENPLPNDKDKDKQENDNAGSSSVIEKQECRNKGNVIRMNSSSSRWPKDEVEALIRLRTNLKVDYEGNGLKEPLWEEISCAMKKLGYDRSAKRCKEKWENMNKYYKRMKEQKKKKPEDSKTCHYFNQLNALYSREKPNKVNQETNSGKDQSQPEEPPMHIMEGQSQTSSEDADREKKDHSNGGDGGN 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0336 466 Gene3D - 44 105 - -
Dere03g0336 466 Gene3D - 325 386 - -
Dere03g0336 466 SUPERFAMILY Homeodomain-like 322 383 IPR009057 -
Dere03g0336 466 CDD GT1 323 384 - -
Dere03g0336 466 MobiDBLite consensus disorder prediction 297 322 - -
Dere03g0336 466 ProSiteProfiles Myb-like domain profile. 317 381 IPR001005 -
Dere03g0336 466 MobiDBLite consensus disorder prediction 447 466 - -
Dere03g0336 466 FunFam Trihelix transcription factor GT-2 325 386 - -
Dere03g0336 466 PANTHER FI21293P1 19 454 - -
Dere03g0336 466 MobiDBLite consensus disorder prediction 164 192 - -
Dere03g0336 466 MobiDBLite consensus disorder prediction 275 322 - -
Dere03g0336 466 FunFam Trihelix transcription factor GT-2 44 105 - -
Dere03g0336 466 MobiDBLite consensus disorder prediction 167 182 - -
Dere03g0336 466 MobiDBLite consensus disorder prediction 1 24 - -
Dere03g0336 466 Coils Coil 202 226 - -
Dere03g0336 466 CDD GT1 42 107 - -
Dere03g0336 466 ProSiteProfiles Myb-like domain profile. 36 100 IPR001005 -
Dere03g0336 466 MobiDBLite consensus disorder prediction 410 466 - -
Dere03g0336 466 Pfam Myb/SANT-like DNA-binding domain 42 128 IPR044822 -
Dere03g0336 466 Pfam Myb/SANT-like DNA-binding domain 323 410 IPR044822 -
Dere03g0336 466 MobiDBLite consensus disorder prediction 1 16 - -
Dere03g0336 466 MobiDBLite consensus disorder prediction 410 431 - -
Dere03g0336 466 SMART sant 40 102 IPR001005 -
Dere03g0336 466 SMART sant 321 383 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0336 Dere-ChrDere03 7008873 7010558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0336 30 411 Trihelix Transcription Factor Family AT1G76890 43.469 1.41e-112 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere03g0336 Myb_DNA-bind_4 1.3e-20 CL0123