Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0330 ATGGATTTGGACGATTTCCGATCACTATTGGAGACTGCAGGTGTGGATGTATGGATGTTCATCGACACTGCAATCGACGTGGCTTCCATCGATTACAGCAATGAATTGAAGCATCGGAGGGATGGAATTGTTCAGCGTCTGTACGGGGCCACTTCAGCTCCTGGACGGTGTCGCAATTGCGAAGCCGGAAATCTCAAGCCTAATGGCCACGGAATAAGCGCTCCAATCAAGAAACAGAGCACTCCTAAAGAGAAAAGAGATGCTTCGCCTGCAACGCCGCACTTTATTGGTCCAGACGACGAAGATTTAGATCCTTGCGGAGGCCTTCTTGACAGTGAGCAGAAGAAGATTCAAGTGATCAAAGAGCAACTTGAGGAGTCTGACCAGTCGGAAGATTCGGTGGTGGAGTTGCTTCAAAATCTCGCAGACATGGATATCACATTCCAAGCGCTAAAGGAAACTGATATTGGAAGGCACGTAAATCGGTTGCGCAAGCATCCGTCCAATGATGTTCGGAGATTAGTGAAGCTACTAGTCAGGAAATGGAAGGAGATTGTTGATGAATGGGTGAAGGTAAATCAAGCAGGAGATCCCGCTTCTATCATGGCTGATGGAGATTCGCCTCTGCAGAAATATCCCCAAAATGGGCATAATCAGATTCCTGATTTTGCGTACTCGCCTAATCCGCACAATGGGCGTTCAGCGTCAGAGCGGAACTATTCAGAAGCAGAACCAAAACCAAAAACAGTTCCTCGAAAAGCACCACCAAAACCAGCGATCTCCATTCCTATTCCTGCTTCTGCTCCTCAAAACAGAAAGAGAGAACAGAAAGATAGCAATTTGGAAGCGGAGAGACTTGCTTCGGCAAGAAGACGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAGGCAAAGAACGATCCAGGTGATGGACGTCCATGAGATACCAAAACCCAAGAATGCCTTCTTTGCAAAGAACAAAGGTGGTGGCGGTTCTCAGGGTACTAGGCACTGGAGGGACCCCAAGGGATAA 1038 0.4759 MDLDDFRSLLETAGVDVWMFIDTAIDVASIDYSNELKHRRDGIVQRLYGATSAPGRCRNCEAGNLKPNGHGISAPIKKQSTPKEKRDASPATPHFIGPDDEDLDPCGGLLDSEQKKIQVIKEQLEESDQSEDSVVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKVNQAGDPASIMADGDSPLQKYPQNGHNQIPDFAYSPNPHNGRSASERNYSEAEPKPKTVPRKAPPKPAISIPIPASAPQNRKREQKDSNLEAERLASARRRLQENYKEAENAKRQRTIQVMDVHEIPKPKNAFFAKNKGGGGSQGTRHWRDPKG 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0330 345 ProSiteProfiles TFIIS N-terminal domain profile. 115 189 IPR017923 -
Dere03g0330 345 MobiDBLite consensus disorder prediction 322 345 - -
Dere03g0330 345 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 114 197 IPR035441 -
Dere03g0330 345 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 340 IPR044790 -
Dere03g0330 345 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 110 198 IPR035441 -
Dere03g0330 345 MobiDBLite consensus disorder prediction 237 251 - -
Dere03g0330 345 SMART TFS2_5 117 188 IPR003617 GO:0005634
Dere03g0330 345 MobiDBLite consensus disorder prediction 211 236 - -
Dere03g0330 345 Pfam TFIIS helical bundle-like domain 137 186 IPR017923 -
Dere03g0330 345 Coils Coil 283 310 - -
Dere03g0330 345 CDD TFIIS_I 114 187 - -
Dere03g0330 345 MobiDBLite consensus disorder prediction 63 103 - -
Dere03g0330 345 MobiDBLite consensus disorder prediction 271 307 - -
Dere03g0330 345 MobiDBLite consensus disorder prediction 198 307 - -
Dere03g0330 345 Coils Coil 110 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0330 Dere-ChrDere03 6958091 6960387 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Dere03g0330 Med26 1.4e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0330 03 6958091 6960387 Dere03g0330 03 6958091 6960387 ECH