Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0322 ATGGAGTTCGACGAGTATGATTACTTGGAAAAGACAGTGGAGGAGCAGGAAGATCGAGATTCGACGAAGAAGAGCAAGGAGAGAAGCGACAAGAGTGAGAGGAGTTACAGGAAGCGTGATGTCGACGAGGATGTTGATGGTGAAGACAAGAAGAGCAAGAGGCCCAGGGGCGACGACGAGAATGGGTCGAGGAGGGATCGTGAGGACCGCGAAAGAGAACGGTCTAGTCGAGAAAAGGAGCGGCATAGGAGTGGTAGAGATAGGGAGAGGGACGGGGAGAGAGATGGAGAGAGGGAGCGAGAGAGGGGTAGTAGGGAAAGAGATAGGGAGAAAGAGAGAGACAAGGAGAGGGAAAGAGAAAGAAAGGATAAGGAGAGGGAGAGGGACAGGGACAGGGAGAGAAGAGAGAGGGACAGGGAGAGGGAAAAAGAGCGGGAAAGAAGGGAGAGGGAGAAGGAAAGAGAGAGGGAGCAGATGGAGAGGTCCCGGAGAAGCAGAAGTCGTTCTGATCGAGATAGAGAAAGAGAAAGAGAATTAGAAACCAGAGATAGCCGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGATCCTGAAAGGGATCAGAGAACTGTTTTTGCTTACCAGATGCCCCTAAAAGCCACAGAAAGAGATGTTTATGAGTTTTTCTCAAAAGCTGGCAAGGTGAGGGATGTCCGTTTGATCATGGATAGGAACTCCAGACGTTCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCACTTTCTGGCCAACTGCTTCTTGGACAACCTGTAATGGTTAAGCCTTCTGAGGCTGAAAAGAACCTTGTTCAGTCCAATACTTCCAGTGGAGGTGCAGGTGTAGCAGGACCATATGGAGCTGTGGACAGGAAACTGTATGTGGGGAACCTTCACTTCAACATGACTGAAAGTCAGCTGAGAGAGATTTTTGAGCCGTTTGGTCCAGTGGAGCTTGTTCAACTGCCCCTTGACCTAGAGACAGGACATTGCAAGGGTTTTGGATTTGTACAATTTGCCAATCTTGAACATGCCAAGGCGGCTCAGAGTTTGAATGGGAAGTTGGAGATTGCTGGTAGGACTATCAAGGTTTCATCTGTAACTGATCATGTTGGAAGCCAAGATACTACTGCTAAATCTGCTGACTTGGATGATGATGAAGGCGGATTGTCCTTAAATGCCCAATCAAGAGCATTGCTGATGCAAAAGCTGGATCGCTCTGGGATTGCTACAAGTATTGCAGGGTCTATTGGTGGTGTGCCCATTGTGAATGGCTCAGCTCCTGTGCAGCAGGCTATTAGTTTGCCCGTTGGAGGTCCAGGTATAGTACCTGCATCAGCTCTCCCAACACCCATCATGCCTACCCCAGGGGGAGAGCCAGTTGGAAGCCCCAGTGAGTGTTTACTGTTGAAGAATATGTTCGATCCAACTACTGAGACAGAACCAGATTTTGATGAGGATATCAAAGAGGATGTGGAAGAAGAATGTTCTAAATTTGGCCGGGTGAAGCATATTTATGTTGACAAAAGGAGTGCAGGTTTTGTGTATCTTCGGTTCGAAACAGTGCAAGCAGCTAGTGCTGCTCAACAGGCAATGCATATGAGATGGTTTGCACGCAGGTTGATTTCAGCGGTCTACATGCAACCTCAGGTGTACGAGGCCAAGTTTAAAGGAGAAGCTTGA 1731 0.4806 MEFDEYDYLEKTVEEQEDRDSTKKSKERSDKSERSYRKRDVDEDVDGEDKKSKRPRGDDENGSRRDREDRERERSSREKERHRSGRDRERDGERDGERERERGSRERDREKERDKERERERKDKERERDRDRERRERDREREKERERREREKEREREQMERSRRSRSRSDRDRERERELETRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTSSGGAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFANLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADLDDDEGGLSLNAQSRALLMQKLDRSGIATSIAGSIGGVPIVNGSAPVQQAISLPVGGPGIVPASALPTPIMPTPGGEPVGSPSECLLLKNMFDPTTETEPDFDEDIKEDVEEECSKFGRVKHIYVDKRSAGFVYLRFETVQAASAAQQAMHMRWFARRLISAVYMQPQVYEAKFKGEA 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0322 576 CDD RRM1_RBM39_like 206 278 - -
Dere03g0322 576 Coils Coil 107 165 - -
Dere03g0322 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 482 565 IPR000504 GO:0003723
Dere03g0322 576 MobiDBLite consensus disorder prediction 1 204 - -
Dere03g0322 576 MobiDBLite consensus disorder prediction 12 204 - -
Dere03g0322 576 Gene3D - 198 292 IPR012677 -
Dere03g0322 576 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 572 IPR006509 GO:0003723|GO:0005634|GO:0006397
Dere03g0322 576 SUPERFAMILY RNA-binding domain, RBD 307 565 IPR035979 GO:0003676
Dere03g0322 576 CDD RRM2_RBM23_RBM39 309 386 - -
Dere03g0322 576 FunFam Splicing factor CC1-like 131 290 - -
Dere03g0322 576 SUPERFAMILY RNA-binding domain, RBD 198 300 IPR035979 GO:0003676
Dere03g0322 576 Gene3D - 478 575 IPR012677 -
Dere03g0322 576 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 400 500 IPR029123 -
Dere03g0322 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 274 IPR000504 GO:0003723
Dere03g0322 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 379 IPR000504 GO:0003723
Dere03g0322 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 505 558 IPR000504 GO:0003723
Dere03g0322 576 FunFam Splicing factor CC1-like 291 396 - -
Dere03g0322 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 282 IPR000504 GO:0003723
Dere03g0322 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 385 IPR000504 GO:0003723
Dere03g0322 576 NCBIfam splicing factor, CC1-like family 86 572 IPR006509 GO:0003723|GO:0005634|GO:0006397
Dere03g0322 576 CDD RRM3_RBM39_like 481 563 - -
Dere03g0322 576 FunFam Splicing factor, CC1-like protein 477 576 - -
Dere03g0322 576 SMART rrm1_1 206 278 IPR000504 GO:0003723
Dere03g0322 576 SMART rrm1_1 308 381 IPR000504 GO:0003723
Dere03g0322 576 SMART rrm1_1 483 560 IPR000504 GO:0003723
Dere03g0322 576 Gene3D - 303 399 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0322 Dere-ChrDere03 6857680 6864222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0322 279 380 Eukaryotic Initiation Factors Gene Family AT4G34110 36.893 7.00e-09 56.6