Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0320 ATGCCAATCAATTTTCCAGGCATGAACAGAGAGAGGGAGATGTCTGAGATGGTCTCCGCTTTGACCCACGTGGTCGCCGGAGATGTTCCTGGAGACTCGGGTGCGGTTTCGAGCGGCGGCGGGACACCGTCTTCGTCTTCTTCATCTTACGGTGGCAACTCTGTTCTGAAAAGAAGTAGGGAAGATGATAACAGATCCTTTGGTGAAGGTTCTTCCACTGCTATTATTCAAACAATTCCAGAAAGTTCGAGATCAGAAATAGTCCAAATGGGAAATGCAGTGTATGAATATAGTAGCAGTATAGAGAATGTGAGAGAGCAAGGAAGAAGAAAATACAGAGGAGTGAGACAGAGGCCGTGGGGCAAGTGGGCAGCTGAAATCAGAGACCCTTTCAAAGCTGCCCGGGTATGGTTGGGCACCTTCGACACGGCCGAAGCTGCTGCCCGAGCCTACGACGAAGCTGCCCTGCGTTTCAGAGGCAACAAGGCAAAGCTCAATTTCCCCGAAAATGTCAGGCTCCGGCAACAACCTCCGGTGACTCCTCCGGCGACCCATTTGGGAATTTCGGATTCTGCAGGCACCCTTTTGTCCATTCCGACATCCACCGAGCCTATTGTTCATACTGAAGCTCTTCATCACCCTCTTCCGTGTTCTCAGGCGGCTTCAAGTGATTTTTATAACTATTCGCAGTTTTCGGATTTTCCCATGAGTTTTTATGATCAGATGATTATGTCATCTACAATGGCTTCTCATCTTCAGTCATCCTGTTCGCCGTCAGCTTCGTCGTCGCCGTCTTCGGCTTCTACGTTGGCCTCTTCCATGAACTCTCCGCCGGCAGCTTTTCTTTATCCGGGTCGGGTCTTACCGGAAACGGGTCAGACAAGCGGTTCCGAGTACGTGCCATCAACGTGGTCAGCTTCGGGTCATAGTTCATCTTCCTCCTGA 945 0.5058 MPINFPGMNREREMSEMVSALTHVVAGDVPGDSGAVSSGGGTPSSSSSSYGGNSVLKRSREDDNRSFGEGSSTAIIQTIPESSRSEIVQMGNAVYEYSSSIENVREQGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVRLRQQPPVTPPATHLGISDSAGTLLSIPTSTEPIVHTEALHHPLPCSQAASSDFYNYSQFSDFPMSFYDQMIMSSTMASHLQSSCSPSASSSPSSASTLASSMNSPPAAFLYPGRVLPETGQTSGSEYVPSTWSASGHSSSSS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0320 314 MobiDBLite consensus disorder prediction 290 314 - -
Dere03g0320 314 MobiDBLite consensus disorder prediction 37 55 - -
Dere03g0320 314 SUPERFAMILY DNA-binding domain 111 169 IPR016177 GO:0003677
Dere03g0320 314 CDD AP2 111 170 IPR001471 GO:0003700|GO:0006355
Dere03g0320 314 PANTHER DNA-BINDING DOMAIN 78 257 IPR044808 GO:0003700|GO:0009873
Dere03g0320 314 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Dere03g0320 314 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Dere03g0320 314 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Dere03g0320 314 MobiDBLite consensus disorder prediction 254 276 - -
Dere03g0320 314 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Dere03g0320 314 MobiDBLite consensus disorder prediction 27 73 - -
Dere03g0320 314 Gene3D AP2/ERF domain 110 170 IPR036955 GO:0003700|GO:0006355
Dere03g0320 314 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Dere03g0320 314 MobiDBLite consensus disorder prediction 254 314 - -
Dere03g0320 314 FunFam Ethylene-responsive transcription factor 2 110 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0320 Dere-ChrDere03 6829857 6831406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0320 7 211 AP2-EREBP Transcription Factor Family AT5G64750 46.835 8.91e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere03g0320 AP2 3.6e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0320 03 6829857 6831406 Dere03g0320 03 6829857 6831406 ECH