Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0276 ATGACAGGGAAGAGAAACCAGAGCAGTCCAGAGGGAAGTCCACCATGTGGGATCATCTCAGACAGCTTCTGTAAAGAACAAGACAGGTTACTGCCAGTGGCCAACGTAAGTCGTATAATGAAAAGAGCACTTCCAGCGAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTGTGCAAGAATGTGTGTCTGAGTTCATCAGCTTCATCACAGGGGAAGCATCCGACAAGTGCCAGCGAGAGAAGAGGAAGACAATCAACGGCGACGATCTTCTCTGGGCCATGACAACCTTGGGATTCGAGAACTACGTTGTACCTTTGAAGGTGTACCTCAACAATTTCAGAGAAACAGAGGGGGAAAAGAGCTCCACTGCTAGACAAGATGATCATATCTCAACAGAAGAAGCTAATCTGACCATTTCTGAATCAGCTCCGAGTTTCAATGGTGGGTTTTTCTCTGATGGGTCTCAAGTGAATCCGATGAACAGAACTTTTGCTCAGAATGTGATTCATGGAGACACAGATGCGAACCTGCGTTATGGAGTTGGATGGTAA 552 0.4601 MTGKRNQSSPEGSPPCGIISDSFCKEQDRLLPVANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVVPLKVYLNNFRETEGEKSSTARQDDHISTEEANLTISESAPSFNGGFFSDGSQVNPMNRTFAQNVIHGDTDANLRYGVGW 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0276 183 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dere03g0276 183 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
Dere03g0276 183 SUPERFAMILY Histone-fold 27 147 IPR009072 GO:0046982
Dere03g0276 183 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Dere03g0276 183 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Dere03g0276 183 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Dere03g0276 183 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 141 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dere03g0276 183 Gene3D Histone, subunit A 19 145 IPR009072 GO:0046982
Dere03g0276 183 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0276 Dere-ChrDere03 6393432 6393983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0276 25 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.714 7.03e-63 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dere03g0276 CBFD_NFYB_HMF 4.9e-26 CL0012