Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0267 ATGAACCGGATCTACCTGGGTTCCAGTTGGAGCTCAGGGAATTTCGTTCTGGTTTTTGTGGCCACCAGGTTGGCAGGATTTGAGCGGGAAAAGCTTCTGAAAGTAGCTTTCAAAGGTTCGGCTTCTATTCCCTTCTACTTTCAAAGAATTGAATTCCCTTTAACTACCAAGGAAAATGAGGAGAAAATGAATTCTCCATCCACACAGTTTGTTTCCTCAAGAAGGATGAGTGTGTATGATCCAATCCACCAGATTAATATGTGGGGAGAAAATTTCAAAAGTAATGGTAATTTAAGTGCCTTAATTGGTGAGGCAGACGTGAAATTATATGATCAGGATGCTTCTCATGGAGCACTGGGTACGTCTAAGATGTGTGACCATGAAGCAAATAAACCTTTTGATAAGATACAAAGACGTCTTGCACAAAATCGGGAGGCTGCTCGAAAGAGTCGTCTGCGGAAAAAGGCTTATGTGCAGCAATTAGAATCAAGTCGTTTGAAGCTGATCCAGTTAGAGCAAGAGCTCAACCATGCAAGACAACAGGGTTTATATATGGGTGCTGGATTGGATTCTAATAATATGGGTTTTGCTGGAAATGTAAATTCAGGCATTACAACCTTTGAGATGGAGTATGGACACTGGGTCGAAGAGCAGAATAGACAAATCTACGAACTGAGAGGTGCTTTAAATGCTCATATTGGTGACATGGAGCTCAGGATACTTGTAGATAGTATTATGAATCACTATTTTGAATTCTATCGCATGAAATCTGCTGCTTCAAAAGCAGATGTTTTCTATGTGATGTTCGGTATGTGGAAAACAACAGCTGAACGATTTTTCTTGTGGATTGGAGGCTTTCGCCCCTCTGAGCTTCTGAAGGTTATTGTCCCTCTGATTGAACCTTTGACAGAGCAACAACGGTTGGATATCTCTAACCTTGGACAGTCTTGTCAACAAGCAGAAGATGCCCTTTCTCAAGGTATGGATAAACTCCAGCAAACACTTGCTGAGACTGTAGCAGATGGACAATTAGTTGAAGGAACTTGTATCCCTCAGATGGCTACTGCAATGGAGAAAATGGAAGCTCTGGTGAGCTTTGTAAACCAGGCTGACCATCTTCGTCAGGAAACCTTGCAGCAAATGTTTCGGATCCTCACAATCCGCCAGGCCGCTCGATACCTGCTTACTCTTGGGGAATACTCCCAACGCCTGCGAGCCTTGAGCTCACTATGGGCTAATCGTCCTCGTGAACCAGCTTAG 1260 0.4325 MNRIYLGSSWSSGNFVLVFVATRLAGFEREKLLKVAFKGSASIPFYFQRIEFPLTTKENEEKMNSPSTQFVSSRRMSVYDPIHQINMWGENFKSNGNLSALIGEADVKLYDQDASHGALGTSKMCDHEANKPFDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLIQLEQELNHARQQGLYMGAGLDSNNMGFAGNVNSGITTFEMEYGHWVEEQNRQIYELRGALNAHIGDMELRILVDSIMNHYFEFYRMKSAASKADVFYVMFGMWKTTAERFFLWIGGFRPSELLKVIVPLIEPLTEQQRLDISNLGQSCQQAEDALSQGMDKLQQTLAETVADGQLVEGTCIPQMATAMEKMEALVSFVNQADHLRQETLQQMFRILTIRQAARYLLTLGEYSQRLRALSSLWANRPREPA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0267 419 Gene3D - 134 183 - -
Dere03g0267 419 ProSiteProfiles DOG1 domain profile. 204 414 IPR025422 GO:0006351|GO:0043565
Dere03g0267 419 SUPERFAMILY Leucine zipper domain 136 176 IPR046347 GO:0003700|GO:0006355
Dere03g0267 419 CDD bZIP_HBP1b-like 135 186 - -
Dere03g0267 419 Coils Coil 154 181 - -
Dere03g0267 419 Pfam Seed dormancy control 222 296 IPR025422 GO:0006351|GO:0043565
Dere03g0267 419 Pfam bZIP transcription factor 135 164 IPR004827 GO:0003700|GO:0006355
Dere03g0267 419 PANTHER TRANSCRIPTION FACTOR TGA9 63 417 - -
Dere03g0267 419 SMART brlzneu 131 202 IPR004827 GO:0003700|GO:0006355
Dere03g0267 419 FunFam BZIP family transcription factor 134 183 - -
Dere03g0267 419 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 138 153 IPR004827 GO:0003700|GO:0006355
Dere03g0267 419 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 133 175 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0267 Dere-ChrDere03 6322651 6329371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0267 63 419 Calmodulin-binding Proteins AT5G65210 67.120 9.56e-178 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Dere03g0267 DOG1 4.5e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0267 03 6322651 6329371 Dere03g0267 03 6322651 6329371 CCT
Dere03g0267 03 6322651 6329371 Dere03g0267 03 6322651 6329371 ECH