Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0263 ATGGCGGCTCTCTCTGAGATCTTCTCTCAGCTTTGCACCAAGGCCATAGTCCTATTGGCTCTGTTGCTAATACAACTTATGCTCCTTGTAAGGAAGCTCAAGTCAGATACTCGTCCAATTACCACCACTCAATACCTCAAACTCATTGAACAGAAGAACCCCACAATTTGTTACAGCAAAAGATTGAAGCAAGAACACTTAGAGTGCAGGGTGTGCTTATCTGAATTCCAGGAAGGGGAAAGAGTGAGGCACTTGAAATGCAAACACACATTTCACAAAGATTGCTTGGACAAGTGGTTGCAGCAATGTTGGGCTACCTGCCCTCTTTGCAGGAACCAAGTTCTGCCAGATGATGTTGTGGCCAAGTATCGCCAGCTTCGTAATCAGGTAGAATCTGATGGGAATGATGAGCAGATTATCTTCTTGTTATCCGCATTACGTGGTGGCAGTACTTTGCACAGATATCTCTGA 471 0.448 MAALSEIFSQLCTKAIVLLALLLIQLMLLVRKLKSDTRPITTTQYLKLIEQKNPTICYSKRLKQEHLECRVCLSEFQEGERVRHLKCKHTFHKDCLDKWLQQCWATCPLCRNQVLPDDVVAKYRQLRNQVESDGNDEQIIFLLSALRGGSTLHRYL 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0263 156 Pfam Ring finger domain 68 111 IPR001841 -
Dere03g0263 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 116 IPR013083 -
Dere03g0263 156 ProSiteProfiles Zinc finger RING-type profile. 69 111 IPR001841 -
Dere03g0263 156 SUPERFAMILY RING/U-box 50 117 - -
Dere03g0263 156 PANTHER - 1 151 - -
Dere03g0263 156 SMART ring_2 69 110 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0263 Dere-ChrDere03 6277494 6277964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0263 68 125 C3H Transcription Factor Family AT1G15100 53.448 7.85e-18 73.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0263 03 6277494 6277964 Dere03g0263 03 6277494 6277964 CCT
Dere03g0263 03 6277494 6277964 Dere03g0263 03 6277494 6277964 ECH