Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0251 ATGGCGGCCACTCTTGCTTGGAGGTTTGGTGCCAACAATGGCGGCAGCCTTGCTGCTAATGATATGGAAAGAAATGGTGAGGGGAACATTCTAGATTCAGAGCCCCCAACTCCACACTCTGTTTTGAAGATGGGATTGAGAGAGCGCAGCAGCAGCATGGAGGATCCAGATGGGACATTAGCAAGTGTTGCACAGTGCATTGAGCAGCTTCGTCAAAGCTCATCCTCTGCACAAGAGAAAGAGTATTCCTTGAGGCAGTTGTTGGAGCTTATTGATAAGCGTGAAAATGCATTCAGTGCTGTTGGGTCTCACTCTCAGGCAGTTCCAGTGCTTGTTTCTCTTCTCCGTTCAGGGTCTTTGAGTGTGAAGATTCAGGCAGCCACTGTCTTGGGCTCCCTTTGTAAAGAAAATGAGCTGAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCTCCATTGCTTGGGCTACTTAAGTCCAGTTCAGCTGAAGGTCAAGTTGCTGCTGCAAAGACTATTTATGCTGTTTCTGAAGGTGGCACGAAGGATCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTGGTACCAGTGCTCTGGGAGCAGCTTCAAAAGGGGTTGAAGACAGGAAATGTAGTTGATGGTTTACTGACCGGAGCATTGAAAAATCTCTCCTGCACTACTGAGGGATTCTGGAATGCAACAATACAAGCAGGAGGAATGGACATATTAATGAAGTTACTAACAACAGGGCATCCTAACACTTTAGCTAATGTGTGCTTCTTACTTGCCAGCATGATGATGGAGGATGCATCTGTTTGTTCAAAGGTGTTGACAGCAGAGGCGACAAAACAACTCCTCAAACTATTAGGCCCTGGTAATGATGCCCCTATTCGAGCTGAAGCAGCTGGTGCCCTTAAATCTCTGTCTTCTCAGTGCAAAGAAGCAAGGAGGGAGATAGCTAATTCTAATGGTATTCCTGCTTTGATCAATGCTACCATAGCACCTTCGAAAGAGTTCATGCAAGGTGAGCATGCTCAAGCATTGCAGGAAAATGCTATGTGTGCTCTAGCAAACATCTCTGGTGGTTTGTCTTATGTCATCTCCAGCCTCAGTCAAAGCCTTGAATCATGCACCTCACCTACCCAAATTGCTGATACGTTAGGGGCTTTAGCTTCAGCTCTTATGATATATGATAACAAGGCTGAATCTACTAGATCATCAGATCCTTTGCTAGTTGAGCAGACATTGCTCAAGCAATTCAAACCTCACTTGCCTTTCCTTGTCAAGGAACGGACGATTGAAGCCCTAGCTAGTCTGTATGGCAATCCTGTACTCTCAATTAAACTTACAAATTCAGATGCAAAACATTTGCTTGTTGGATTAATAACGATGGCTGTTAACGAAGTGCAAGATGAGCTTATAAAAGCTCTCTTGACACTTTGCAACGATGAAGGCAGTCTATGGCGTGCACTTCAAGGCCGCGAAGGAGTTCAGCTGTTGATATCTCTTCTGGGGCTTTCATCAGAACAACAGCAAGAATGTGCAGTTGCTCTACTTTGCCTTCTATCTAACGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCACTAGTTCAAATTTTGGAGACAGGATCCGCAAAAGCTAAGGAAGATTCAGCAACAATCCTTACAAACTTGTGCAATCACAGTGAAGATATACGTGCATGTGTTGAAAGTGCTGATGCTGTTCCTGCATTGTTGTGGCTGTTGAAGAATGGAAGCCCAAATGGAAAGGAGATAGCTGCAAAAACCTTAAATCACTTAATTCATAAATCTGATACCACCACAATCAGTCAGCTTACAGCGTTGTTAACAAGTGATCTACCTGAATCTAAGGTTTATGTTTTGGATGCTTTGAGAAGTATGCTATCAGTTGCTCCTCTTAGCGACATTCAAAGAGAAGGTAGTGCTGCAAGTGATGCAATTGATACAATGATAAAATTACTGAGCTCTACCAAAGAAGAAACTCAGGCAAAGTCTGCATCAGCTCTGGCGGGAATCTTTGAAATGAGGAAAGATGTGCGTGAAAGCAATGTTGCTGTTAAAACTCTTTGGTCAGCCATGAAGTTGCTTAATATTGAATCTGAAAGGATCCTAATAGAGTCCTCGCGCTGTCTTGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTAGCTGCTGTTGCTAGAGATACATTATCCCCCTTAGTTGCACTAGCTAATTCTTCAGTTTTGGAAATTGCAGAGTTGGCAACATGTGCTGTGGCAAATCTTATTTTAGATAGTGAGATTTCACAGAAAGCTATTGCTGAAGAAGTTATCTTGCCTGCTACTAGAATATTGCGTGAAGGCACAATTTCTGGAAAAACCCATGGTGCAGCAGCCATTGCTCGCCTCTTACAGTCTCGGGAAGTTGATTATTCTGTGACTGATTGTGTAAATCGTGCTGGGACTGTGCTTGCTTTGGTTTCCTTCTTAGAGTCTGCTATTAATGGATCAGTGTCCACATCAGAGGCTATTGAAGCACTTGCCATTCTGTCTAGGTCAGAAGACAACAGTGCACATAATATTAAACCTGCATGGGCTGTATTGGCTGAATTCCCTAAAAGCATAAACCCAATAGTCCTGTCTATTGCTGATTCAACACCAATGTTGCAAGATAAAGCTATTGAGATATTATCGCGATTATGCAGGGATCAGCCTATTGTTTTAGGAGACAGTGTTGTTACAGCCTCTGGATGTATATGTTCATTAGCTAAAAGGGTGATTGGTACCAAAAATGTAAAGGTCAAAATTGGGGGAGCTGCACTTCTTATTTGTGCTGCCAAAGTAAATCACCAGAGACTGGTGGAGGAGCTCAATCAATCAAACTTGTGTGCTGATCTGGTTCAATCTCTTGTTAATATGCTTGCTTCTGCACAGCCTTATATGTCAAACCAGGGTGAAGAAAACAAGGAATTCATCAGCATTTTGATACATACGAAAGAAGATGCCAATGGTGGTGCATCCAATACAGGCACTGCCATTATATCTGGAGCCAACTTAGCCATATGGTTAATGTCTGTTCTTGCTTGTCATGATGAAAAAAGTAAGAGCGCAATAATGGAGGCTGGAGCAATTGACTTTCTTACTGAAAAAATCGCAATTTGTTTCTCACAATATACTCAGATCGACTATAAAGAAGATAGCAGCATGTGGATTTGTGCTCTGTTGTTGGCAATATTATTTCAAGATAGAGATATCATACGAGCACATGCAACCATGAAATCTATACCAGCACTTGCCAGTTTATTGAAGTCAGAGGAAGCAGCTAACAGATATTTTGCTGCACAATCAATAGCTAGCCTAGTCTGTAATGGTAGCAGGGGGACACTTCTATCTGTTGCAAACTCGGGGGCTGCAAGTGGACTTATCTCCTTGCTTGGCTGTGCTGACACTGATATACAAGACCTTCTGGACTTGTCAGAGGAATTCTCTTTGGTTCATTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATTAGGGTTGGTGCCACTTCTCGGAAGGCAATACCTGCCCTTGTTGATCTGCTCAAACCAATTCCAGATCGCCCAGGGGCACCATTTTTAGCACTTGGACTTCTAACTCAACTTGCTAGAGATTGTCCATCAAACAAGATTGTAATGGTAGAATCAGGGGCATTGGAGGCACTTACAAAGTATCTTTCACTGAGTCCCCAAGATGCAACTGAAGAAGCTGCTACTGATCTATTGGGAATTCTGTTTGAGACTCCTGAGATACGGAGACATGAGTCAGCATTTGGTGCTGTTACTCAACTTGTAGCTGTCCTACGTTTAGGAGGAAGAGGTGCAAGGTACAGTGCTGCCAAAGCGTTGGAAAGTTTATTCTCTGCTGACCAGATTCGGAATGCAGAGACTGCTAGACATGCTGTTCAACCCTTGGTGGAGATTCTTAATACTGGTTTAGAGAGGGAACAGCATGCTGCAATTGCTGCATTGGTTAGGCTACTGAGTGAAAATCCATCGAGAGCATTAGCTGTTGCTGATGTCGAAATGAACGCAGTGGATGTGCTTTGCAGGATCCTTTCATCAAATTGTTCGATGGACCTCAAAGGGGATGCTGCTGAATTATGTTGTGTTCTCTTTGGAAATACAAGGATTAGGTCCTCAATGGCTGCTGCACGCTGTGTTGAACCTCTAGTCTCTCTCCTTGTAAGTGAGTTTAGTCCAGCCCAGCAATCAGTTGTCCGTGCATTGGATAGGCTTGTTGATGATGAGCAACTAGCAGAACTAGTTGCTGCTCATGGTGCAGTTATTCCTCTTGTTGGTCTACTCTATGGTAGGAATTATTTGCTCCACGAGGCCATTTCTAGAGCTCTGGTCAAACTAGGGAAAGACAGGCCTGCTTGTAAAATGGAAATGGTGAAAGCCGGAGTTATTGAAAGTGTACTTGACATTCTTCATGAAGCACCTGATTATTTATGTGCAGCTTTTGCGGAATTGCTGCGTATATTGACCAATAATGCTAGCATAGCTAAAGGACCATCTGCTGCTAAAGTGGTTGAACCTCTTTTTTTGTTGCTGACAAGACAAGAATTTGGGCCTGATGGGCAGCACAGTGCATTGCAGGTTTTGGTTAATATCTTGGAACATCCACAATGTCGTGCTGACTATACATTGACATCTCACCAAGCAATTGATCCACTTATCCCCTTGCTTGATTCTTCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTTTCACATCTGCTTTTGGAAGAACACCTTCAGAAGGATCCAGCAACACAGCAAGTAATTGGTCCTCTTATTCGAGTTCTTGGTTCTGGCATACACATATTGCAGCAGAGAGCTGTAAAAGCCCTAGTTAGTATAGCACTGATATGGCCAAATGAAATTGCGAAAGAGGGTGGTGTTACTGAACTTTCAAAAGTGATACTGCAAGCTGATCCTTCCATTCCTCATGCTTTGTGGGAATCTGCTGCTTCTGTATTGGCAATTATACTGCAATTCAGTTCTGAATTCTACTTGGAAGTACCTATTGCTGTGTTGGTAAGGTTGCTTCGTGCTGGCTCAGAGAGCACAGTTATTGGTGCATTAAATGCTCTTCTGGTGCTGGAAAGTGACGATGGAACTAGTGCAGAAGCAATGGCTGAAAGTGGTGCAATAGAGGCTCTCTTAGAGCTTCTAAGATCTCATCAGTGCGAGGAAACTGCTGCTAGACTATTGGAAGTATTGCTGAACAATGTCAAGATAAGAGAAACAAAAGTTACTAAATTGGCCATCTTACCTTTATCCCAGTACCTCTTGGACCCACAAACCCAAGCACAGCAGGCAAGGTTACTGGCAACCTTGGCTCTTGGTGATCTATTCCAGAATGAGAGTCTTGCTCGGACAACTGATGCAGTTTCAGCATGCCGTGCATTAGTGAATGTGCTTGAAGATCAACCAACAGAAGAAATGAAAGTTGTAGCAATATGTGCTTTGCAGAACCTCGTGATGTACAGTCGATCAAATAAAAGAGCAGTTGCTGAGGCTGGTGGTGTACAGGTTGTATTGGATCTGATAGGTTCTAGTGATCCAGAAACATCTATTCAGGCTGCAATGTTCTTTAAACTTCTCTTCTCCAATCATACAATTCAAGAGTACGCTTCAAGTGAAACAGTCAGAGCAATAACTGCCGCTATTGAGAAGGATTTATGGGCTACTGGAAGTGTGAATGATGAGTATCTGAAAGCCTTAAATGCTCTTTTTAGTAACTTCCCACGACTGAGAGCAACTGAGCCAGCAACGCTTAGCATTCCTCATCTGGTTACATCCTTAAAGACAGGCTCAGAGGCCACTCAAGAAGCTGCCTTGGATGCACTTTTTCTTCTCAGGCAAGCTTGGTCAGCATGCCCAGCAGAAGTTTCAAGAGCTCAGTCAATAGCAGCTGCAGATGCTATTCCTTTATTGCAGTACTTAATCCAGTCTGGCCCACCTCGGTTTCAAGAGAAGGCTGAATTTTTATTGCAGTGTTTGCCAGGCACTTTAGTTGTGATCATCAAACGTGGTAACAATATGAAGCAGTCGGTGGGAAACCCCAGTGTTTATTGTAAACTTACACTTGGCAACACTCCTCCAAGGCAAACCACGGTGGTCTCGACTGGCCCTAATCCCGAGTGGGATGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAAAAACTTCATATTTCTTGCAAAAATAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACCATTCAAATTGATCGGGTCGTAATGCTAGGAACCGTAGCCGGAGAGTACACTCTATTGCCGCAAAGTAAAAGTGGTCCCCCAAGGAATTTAGAAATAGAATTTCAGTGGTCTAACAAGTGA 6459 0.433 MAATLAWRFGANNGGSLAANDMERNGEGNILDSEPPTPHSVLKMGLRERSSSMEDPDGTLASVAQCIEQLRQSSSSAQEKEYSLRQLLELIDKRENAFSAVGSHSQAVPVLVSLLRSGSLSVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIYAVSEGGTKDHVGSKIFSTEGVVPVLWEQLQKGLKTGNVVDGLLTGALKNLSCTTEGFWNATIQAGGMDILMKLLTTGHPNTLANVCFLLASMMMEDASVCSKVLTAEATKQLLKLLGPGNDAPIRAEAAGALKSLSSQCKEARREIANSNGIPALINATIAPSKEFMQGEHAQALQENAMCALANISGGLSYVISSLSQSLESCTSPTQIADTLGALASALMIYDNKAESTRSSDPLLVEQTLLKQFKPHLPFLVKERTIEALASLYGNPVLSIKLTNSDAKHLLVGLITMAVNEVQDELIKALLTLCNDEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILTNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTTTISQLTALLTSDLPESKVYVLDALRSMLSVAPLSDIQREGSAASDAIDTMIKLLSSTKEETQAKSASALAGIFEMRKDVRESNVAVKTLWSAMKLLNIESERILIESSRCLAAIFLSIKENRDVAAVARDTLSPLVALANSSVLEIAELATCAVANLILDSEISQKAIAEEVILPATRILREGTISGKTHGAAAIARLLQSREVDYSVTDCVNRAGTVLALVSFLESAINGSVSTSEAIEALAILSRSEDNSAHNIKPAWAVLAEFPKSINPIVLSIADSTPMLQDKAIEILSRLCRDQPIVLGDSVVTASGCICSLAKRVIGTKNVKVKIGGAALLICAAKVNHQRLVEELNQSNLCADLVQSLVNMLASAQPYMSNQGEENKEFISILIHTKEDANGGASNTGTAIISGANLAIWLMSVLACHDEKSKSAIMEAGAIDFLTEKIAICFSQYTQIDYKEDSSMWICALLLAILFQDRDIIRAHATMKSIPALASLLKSEEAANRYFAAQSIASLVCNGSRGTLLSVANSGAASGLISLLGCADTDIQDLLDLSEEFSLVHYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLARDCPSNKIVMVESGALEALTKYLSLSPQDATEEAATDLLGILFETPEIRRHESAFGAVTQLVAVLRLGGRGARYSAAKALESLFSADQIRNAETARHAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMDLKGDAAELCCVLFGNTRIRSSMAAARCVEPLVSLLVSEFSPAQQSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYLLHEAISRALVKLGKDRPACKMEMVKAGVIESVLDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFLLLTRQEFGPDGQHSALQVLVNILEHPQCRADYTLTSHQAIDPLIPLLDSSISAVQQLAAELLSHLLLEEHLQKDPATQQVIGPLIRVLGSGIHILQQRAVKALVSIALIWPNEIAKEGGVTELSKVILQADPSIPHALWESAASVLAIILQFSSEFYLEVPIAVLVRLLRAGSESTVIGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKLAILPLSQYLLDPQTQAQQARLLATLALGDLFQNESLARTTDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSIQAAMFFKLLFSNHTIQEYASSETVRAITAAIEKDLWATGSVNDEYLKALNALFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTTVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGTVAGEYTLLPQSKSGPPRNLEIEFQWSNK 2152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0251 2152 Gene3D - 1391 1523 IPR011989 -
Dere03g0251 2152 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2031 2135 IPR035892 -
Dere03g0251 2152 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 32 2152 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Dere03g0251 2152 Gene3D C2 domain 2030 2152 IPR035892 -
Dere03g0251 2152 Coils Coil 297 324 - -
Dere03g0251 2152 SMART C2_3c 2032 2128 IPR000008 -
Dere03g0251 2152 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1381 1615 - -
Dere03g0251 2152 SUPERFAMILY ARM repeat 65 397 IPR016024 -
Dere03g0251 2152 FunFam Coatomer beta subunit 1617 2030 - -
Dere03g0251 2152 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2031 2152 - -
Dere03g0251 2152 Gene3D - 48 411 IPR011989 -
Dere03g0251 2152 Gene3D - 1178 1390 IPR011989 -
Dere03g0251 2152 Gene3D - 412 645 IPR011989 -
Dere03g0251 2152 SMART arm_5 136 176 IPR000225 GO:0005515
Dere03g0251 2152 SMART arm_5 481 523 IPR000225 GO:0005515
Dere03g0251 2152 SMART arm_5 311 360 IPR000225 GO:0005515
Dere03g0251 2152 SMART arm_5 646 686 IPR000225 GO:0005515
Dere03g0251 2152 SMART arm_5 1440 1480 IPR000225 GO:0005515
Dere03g0251 2152 SMART arm_5 268 309 IPR000225 GO:0005515
Dere03g0251 2152 SMART arm_5 817 859 IPR000225 GO:0005515
Dere03g0251 2152 SMART arm_5 1482 1522 IPR000225 GO:0005515
Dere03g0251 2152 SMART arm_5 567 607 IPR000225 GO:0005515
Dere03g0251 2152 SMART arm_5 1858 1898 IPR000225 GO:0005515
Dere03g0251 2152 SMART arm_5 1731 1770 IPR000225 GO:0005515
Dere03g0251 2152 SMART arm_5 1399 1439 IPR000225 GO:0005515
Dere03g0251 2152 SMART arm_5 733 771 IPR000225 GO:0005515
Dere03g0251 2152 SMART arm_5 93 135 IPR000225 GO:0005515
Dere03g0251 2152 SMART arm_5 1312 1353 IPR000225 GO:0005515
Dere03g0251 2152 SMART arm_5 1815 1856 IPR000225 GO:0005515
Dere03g0251 2152 SMART arm_5 1230 1271 IPR000225 GO:0005515
Dere03g0251 2152 SMART arm_5 1567 1608 IPR000225 GO:0005515
Dere03g0251 2152 SMART arm_5 1185 1228 IPR000225 GO:0005515
Dere03g0251 2152 SMART arm_5 525 565 IPR000225 GO:0005515
Dere03g0251 2152 SUPERFAMILY ARM repeat 1326 1672 IPR016024 -
Dere03g0251 2152 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
Dere03g0251 2152 Gene3D - 1792 2029 IPR011989 -
Dere03g0251 2152 Gene3D - 818 1170 IPR011989 -
Dere03g0251 2152 Pfam Armadillo/beta-catenin-like repeat 525 564 IPR000225 GO:0005515
Dere03g0251 2152 Pfam Armadillo/beta-catenin-like repeat 104 134 IPR000225 GO:0005515
Dere03g0251 2152 SUPERFAMILY ARM repeat 653 907 IPR016024 -
Dere03g0251 2152 Gene3D - 646 817 IPR011989 -
Dere03g0251 2152 SUPERFAMILY ARM repeat 875 1160 IPR016024 -
Dere03g0251 2152 ProSiteProfiles C2 domain profile. 2012 2129 IPR000008 -
Dere03g0251 2152 Gene3D - 1697 1789 IPR011989 -
Dere03g0251 2152 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1197 1241 IPR000225 GO:0005515
Dere03g0251 2152 CDD C2 2033 2131 - -
Dere03g0251 2152 SUPERFAMILY ARM repeat 1195 1397 IPR016024 -
Dere03g0251 2152 Coils Coil 2151 2152 - -
Dere03g0251 2152 Pfam C2 domain 2031 2121 IPR000008 -
Dere03g0251 2152 SUPERFAMILY ARM repeat 427 732 IPR016024 -
Dere03g0251 2152 Gene3D - 1524 1696 IPR011989 -
Dere03g0251 2152 SUPERFAMILY ARM repeat 1613 2029 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0251 Dere-ChrDere03 6152303 6162923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0251 496 681 U-box Gene Family AT3G46510 32.000 4.07e-09 60.1