Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0229 ATGACGCAGCAGAATGTGATAGTGTCTGATGCAAAGTCCAGAATCAACGTGGCTTTTACTGTTTCCGTATCCAACTCCTCCATTTTCAACTCTCCGCCGCAGAAACCGGCTGCCGCACCGGCAGGTTACATCTCCATTTCAAGGAAGAAGTTTTTGAAGAACCTTGAAATCAATGGAGGAGCAAGAATCAATGCCTGGGTTGACTCCATGAGAGCCTCTTCCCCCACCCATGCCCATGCCATTGCTGCTACCACTCCTTCTTTGGATGAAGAACAGAGCTCTTGGATTCTTCGTCACCCGTCAGCATTAGACATGTTTGAGCAAATCATCGATGCTTCCAAAGGAAAGCAAATTGTGGTGTTTCTCGACTACGATGGTACACTCTCGCCCATCGTTGAGGACCCTGATCGTGCCTTCATGTCCGACGCGATGAGGAAGACGGTGAGAAAGCTTGCAAGATGTTTTCCCACTGCTATAGTTAGCGGCAGATGCAGAGACAAGGTGTACAACTTTGTTCGCTTGGCAGAGCTATATTATGCAGGAAGTCATGGGATGGATATTAAAGGCCCAACTAAAATCTCCAGATACAATGAAGACAGCAAAGCAGTTCTGTTTCAACCTGCCTGCGAGTTTTTACCCATGATAGACCAGGTTTATAAACTGTTAGTTGAGAAAACAAGCTCAACTCCAGGAGCTAAGGTGGAGAACAACAAGTTCTGCGTATCTGTTCATTTTCGCTGTGTTGATGAAAAGAAATGGAGCGAACTGGCACACCAAGTTAGATCAGTGCTAAAGGAGTATCCCAAGCTTCGTCTTACACAGGGAAGGAAGGTATTAGAGATTCGTCCCCCGATTAAATGGGACAAAGGAGAGGCTCTGGAATTTTTGTTAGAGTCACTTGGATTTGCCAACTGTACCGATGTGTTTCCTGTTTACATTGGGGATGACCGGTCCGATGAAGATGCATTCAAGAAATTAAGACAGAGAGGACAAGGCTATGGCATTCTTGTCTCCAAATTTCCAAAGGATACGAGTGCATCGTACTCTTTACAAGAACCCGACGAGGTGATGGACTTTCTTGAACGATTAGTTGAGTGGAAAACAGTATCTCTGCGAGCACGTTCCAGGGTGTAA 1134 0.4586 MTQQNVIVSDAKSRINVAFTVSVSNSSIFNSPPQKPAAAPAGYISISRKKFLKNLEINGGARINAWVDSMRASSPTHAHAIAATTPSLDEEQSSWILRHPSALDMFEQIIDASKGKQIVVFLDYDGTLSPIVEDPDRAFMSDAMRKTVRKLARCFPTAIVSGRCRDKVYNFVRLAELYYAGSHGMDIKGPTKISRYNEDSKAVLFQPACEFLPMIDQVYKLLVEKTSSTPGAKVENNKFCVSVHFRCVDEKKWSELAHQVRSVLKEYPKLRLTQGRKVLEIRPPIKWDKGEALEFLLESLGFANCTDVFPVYIGDDRSDEDAFKKLRQRGQGYGILVSKFPKDTSASYSLQEPDEVMDFLERLVEWKTVSLRARSRV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0229 377 Gene3D - 222 375 IPR023214 -
Dere03g0229 377 Gene3D - 118 203 IPR023214 -
Dere03g0229 377 FunFam Trehalose 6-phosphate phosphatase 214 373 - -
Dere03g0229 377 Pfam Trehalose-phosphatase 121 353 IPR003337 GO:0003824|GO:0005992
Dere03g0229 377 NCBIfam HAD-IIB family hydrolase 120 326 IPR006379 -
Dere03g0229 377 SUPERFAMILY HAD-like 119 366 IPR036412 -
Dere03g0229 377 CDD HAD_TPP 119 357 - -
Dere03g0229 377 FunFam Trehalose 6-phosphate phosphatase 118 204 - -
Dere03g0229 377 NCBIfam trehalose-phosphatase 116 364 IPR003337 GO:0003824|GO:0005992
Dere03g0229 377 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 32 371 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0229 Dere-ChrDere03 5952822 5955257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0229 114 326 Trehalose Biosynthesis Gene Families AT1G70290 28.829 6.01e-10 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0229 03 5952822 5955257 Dere03g0229 03 5952822 5955257 ECH