Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0210 ATGGGTGCCGCGGGCTCCAAGCTCGAGAAAGCTCTTGGCGACCAATTTCCTGAAGGCGAGCGTTACTTTGGCCTTGAGAACTTTGGCAACACTTGTTATTGCAACAGCGTTTTGCAGGCACTATACTTTTGTGTTCCATTTCGTGAACAATTGCTAGAGTATTATGGAAATAACAGAACCATAGGGGATGCAGAAGAAAATCTTTTAACTTGCTTAGCAGACTTATTTTCTCAGATAACTTCCCAGAAGAAGAAAACAGGTGTTATCGCTCCCAAGCGATTTGTGCAGAGGTTGAAAAAACAGAATGAACTCTTCCGTAGCTATATGCACCAGGATGCCCATGAATTCTTAAACTTCTTGTTAAATGAACTTGTGGACATTTTGGAGAAAGAGGCCCAGGCTGCAAAGAATGATCAAGGGACCTCATCACCTAATTCTGCAAATGGACCTAAGAATGGTTTACCTAACGGTGCTACAAAAGAGCCTCTAGTTACATGGGTGCACAAAAATTTTCAGGGAATACTCACCAATGAGACTAGGTGCTTGCGGTGTGAAACAGTGACAGCTAGGGACGAAACGTTTTTTGACTTGAGCCTTGATATTGAACAGAACAGTTCAATCACAAGCTGTTTGAAAAACTTCAGTTCCACAGAGACACTGAACGCTGAGGACAAATTTTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAAGCCACCTCACGTCTTGGTAATCCATCTTAAGCGGTTTAAGTACATTGAACAGCTGGGCCGATACAAGAAGCTGTCATACCGGGTTGTCTTCCCTCTTGAACTGAAGTTGAGTAACACTGTGGAAGATGCTGATATTGAGTATTCCCTATTTGCAGTAGTTGTCCATGTTGGGAGTGGGCCCAACCACGGACATTATGTCAGTCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGACGATGAAAATGTTGAGATGATTGATGAGTCTGCTGTGCAGACATTCTTTGGTTCAGCACAGGAATACTCCAGTAATACAGACCATGGGTACATTTTGTTCTATGAGAGCCTTGGCTCCGGAAACAAGAACTAG 1104 0.4284 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYGNNRTIGDAEENLLTCLADLFSQITSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQAAKNDQGTSSPNSANGPKNGLPNGATKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHVLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTVEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGSGNKN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0210 367 Pfam Ubiquitin carboxyl-terminal hydrolase 23 358 IPR001394 GO:0004843|GO:0016579
Dere03g0210 367 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 292 310 IPR018200 GO:0004843|GO:0006511
Dere03g0210 367 Gene3D Cysteine proteinases 5 360 - -
Dere03g0210 367 MobiDBLite consensus disorder prediction 135 153 - -
Dere03g0210 367 SUPERFAMILY Cysteine proteinases 21 359 IPR038765 -
Dere03g0210 367 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 361 IPR028889 -
Dere03g0210 367 MobiDBLite consensus disorder prediction 135 159 - -
Dere03g0210 367 FunFam Ubiquitin carboxyl-terminal hydrolase 3 5 360 - -
Dere03g0210 367 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Dere03g0210 367 CDD Peptidase_C19G 24 359 - -
Dere03g0210 367 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 24 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0210 Dere-ChrDere03 5721025 5726141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0210 24 332 Miscellaneous Gene Families AT2G24640 28.391 1.98e-30 119