Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0205 ATGCCTAATTCCAACGTTGTTTTCCCGACGTCGTCGTCACGGGCCGAGGCCGCCGCGACCCGATCCGATCGTGCTCAGGATTCGAATATGATGGTGGATTCTCGGGTTCCCCTTCAGAATCTCTCGATGGTCCGAATGAGAATGGATTACCTGCAACGCTTTCTATCTGAATCTATTCACAGCAACGCGTTCATCAGCAAGGACCAGATGGATTTGGTATCTAAGGAGATCGTCTCCGCTGTCAACCAGATTATCATCAACGGCACCGCTCTTGTCTCCTACTCCCAGAATTTGACGGCTGCCGGCGCGTCGCTATCACCCGTCTCCGGAGACTTACCGGAGCCCCCCGATATGGTGGTGCCGAAGAAGCCATGGTTGGATTATTCTGGTACCGAGAAAGGTGATCTGAAAGTTGAGGCTATGGACAACGAGGTGAAGCACGATGACGAAGATTGCGAAATCGTGGAGCTCGACGCCGTGGAATTGCTAGCGGAGCACGTGCATTTCTGTGAAATCTGTGGGAAAGGATTCAGGCGCGACGCGAATTTGCGAATGCATATGCGTGCACATGGGAATAAATTCAAAACCCTCGAAGCGTTGGCGAAACCCTCTGATAAATCGGACATAACGTGTCGTAAGACGACGCGCTTTTCTTGCCCGTTCGAAGGTTGCAATCGGAACAAGCTACACAAGAAATTCCGGCCTCTGAAGTCGATCGTTTGCGTGAAGAACCACTTCAAAAGAAGCCATTGTCCGAAGATGTATTCCTGCAATCGTTGCCACAAGAAGAGTTTTTCAGTGCTTTCGGATTTGAAGAGCCATTTGAAGCACTGTGGTGAGTCAAAGTGGAAGTGCTCATGTGGAACCACCTTTTCGAGGAAGGATAAATTGTTTGGTCACATAGCTCTGTTTGACGGGCATATGCCAGCTCTTGCTGGTGATGAAGAGGAGAAAGGGAAGCATGTAGTGGAGGAGCAAGATGAGGATGGAATGTTGAAGAAAGATGAATTGGGGCTAAATTGTTTGGATGATGAGTTACCAGAAGGATTCTTTGACGATTTAGATGGCTTTGGCTCAATTGACAACTACTGTTTAGAGGAAGCCCTGGGCTTTTCTAATCATGTAACTTCCTAA 1134 0.4868 MPNSNVVFPTSSSRAEAAATRSDRAQDSNMMVDSRVPLQNLSMVRMRMDYLQRFLSESIHSNAFISKDQMDLVSKEIVSAVNQIIINGTALVSYSQNLTAAGASLSPVSGDLPEPPDMVVPKKPWLDYSGTEKGDLKVEAMDNEVKHDDEDCEIVELDAVELLAEHVHFCEICGKGFRRDANLRMHMRAHGNKFKTLEALAKPSDKSDITCRKTTRFSCPFEGCNRNKLHKKFRPLKSIVCVKNHFKRSHCPKMYSCNRCHKKSFSVLSDLKSHLKHCGESKWKCSCGTTFSRKDKLFGHIALFDGHMPALAGDEEEKGKHVVEEQDEDGMLKKDELGLNCLDDELPEGFFDDLDGFGSIDNYCLEEALGFSNHVTS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0205 377 MobiDBLite consensus disorder prediction 1 26 - -
Dere03g0205 377 SUPERFAMILY beta-beta-alpha zinc fingers 165 191 IPR036236 -
Dere03g0205 377 FunFam Zinc finger 45-like 165 191 - -
Dere03g0205 377 SMART c2h2final6 255 277 IPR013087 -
Dere03g0205 377 SMART c2h2final6 168 190 IPR013087 -
Dere03g0205 377 SMART c2h2final6 217 250 IPR013087 -
Dere03g0205 377 ProSitePatterns Zinc finger C2H2 type domain signature. 170 190 IPR013087 -
Dere03g0205 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 195 IPR013087 -
Dere03g0205 377 Gene3D Classic Zinc Finger 168 191 - -
Dere03g0205 377 Gene3D Classic Zinc Finger 242 310 - -
Dere03g0205 377 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 139 329 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0205 Dere-ChrDere03 5662577 5663710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0205 153 315 C2H2 Transcription Factor Family AT1G34370 64.848 8.46e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere03g0205 None None None