Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0202 ATGGCCTACATAGTAGTTCTTTTGCTTGTGGCTTGCTTTTGTGCTTTTGCATTTCCTGATTCACAAGGGGATGGAGAAGCACTATTTGCACTGAAGGTATCATTGAATGCTTCAGCCAGTCAGCTTGCTGACTGGAATGTAAATCAAGTTAACCCTTGTACCTGGTCCCGTGTTTACTGTGACCAGAATTTCAGTGTTGTTCAAGTTCAACTAGCATTCATGGGATTTACAGGATCCTTGACCCCAAGAATAGGAGCTTTAAAAAGTCTTACAACTCTTTCGTTGCAAGGGAATGCCATCATTGGTGACATACCAGAGGAATTGGGCAATCTGACAAGCTTGACCAGGTTGGATTTGGAAAGCAACAGATTAACTGGTGAAATTCCATCTTCCCTCGGTAAACTTAAAAAGCTTCAATTCTTGACTTTAAGTCAAAACAATCTCAGTGGGTCTATTCCTGAATCACTTGCCAGCCTCCCTAGCTTGATCAATGTTCTGCTGGATTCAAATGATCTCAGTGGTCAAATTCCGGAGCAATTATTCAAAGTTCCTAAATACAATTTTACAGGAAATAAGTTGAATTGTGGCTCAAATTATTCTCACCCTTGTGCATCTGATAGCACATATCAAGGTTCATCTCACAAAGCAAGAATTGGCCTTATAGTTGGAATTATTGTAGCATTAGTTATTATTCTTTTTCTAGGCGGTCTGTTGTTCTTCTGGTGCAAGGGTAGACACAAAGGCTACAAGCGTGAAGTTTTTGTAGATGTGGCAGGGGAAGTTGATCGGCGGATAGCATTTGGTCAACTTAAAAGATTTGCATGGAGAGAATTACAGATAGCTACAGATGACTTCAATGAGAAAAATGTTTTAGGACAGGGAGGTTTTGGGAAGGTTTACAAAGGTGTTCTCCCTGATAACACAAAGATTGCTGTCAAAAGGTTAACTGATTATGAGAGTCCTGGGGGAGATGCAGCTTTCCAGCGTGAAGTTGAGATGATAAGTGTGGCAGTCCACAGGAACCTATTACGGCTAATTGGATTTTGTACAACTCCAACAGAGCGCCTCTTAGTTTATCCCTTCATGCAGAACTTAAGTGTTGCCTATCGTCTACGAGAACTTAAACCAGGGGAACCTGTTTTAGATTGGCCTACAAGAAAGCAAGTAGCTCTGGGCACAGCCCGTGGCCTAGAATATCTTCATGAGCATTGCAATCCTAAGATTATTCATCGGGATGTGAAGGCAGCTAATGTATTACTGGATGAAGATTTTGAGGCAGTTGTTGGTGACTTTGGTTTGGCAAAGCTTGTTGATGTTCGAAGGACTAATGTGACTACTCAAGTTCGTGGGACAATGGGCCACATAGCTCCTGAATACTTGTCAACTGGGAAATCTTCAGAAAGAACTGATGTTTTTGGTTACGGGATCATGCTTTTGGAGCTTGTTACTGGCCAAAGGGCAATTGACTTTTCACGCTTGGAGGAAGAAGATGATGTCTTGTTGCTTGACCATGTTAAGAAACTGGAGCGTGAAAAGAAACTAGATGAAATTGTTGACCGCAACCTAAATAATAATTACAGCATGCAAGAGGTTGAAATGATGATCCAAGTTGCATTACTGTGTACACAAGCATCGCCAGAGGAGCGTCCAGCAATGTCAGAGGTGGTCCGAATGCTAGAAGGAGAAGGGCTGGCTGAAAGGTGGGAGGAATGGCAACATGTGGAGGTGACTCGGAGGCAAGAGTATGAGAGGCTACAGAGAAGATTAAACTGGGGAGACAATTCTCTTCATAACCAAGAAGCCATTGAGTTGTCTGGCGGGAGATGA 1827 0.4247 MAYIVVLLLVACFCAFAFPDSQGDGEALFALKVSLNASASQLADWNVNQVNPCTWSRVYCDQNFSVVQVQLAFMGFTGSLTPRIGALKSLTTLSLQGNAIIGDIPEELGNLTSLTRLDLESNRLTGEIPSSLGKLKKLQFLTLSQNNLSGSIPESLASLPSLINVLLDSNDLSGQIPEQLFKVPKYNFTGNKLNCGSNYSHPCASDSTYQGSSHKARIGLIVGIIVALVIILFLGGLLFFWCKGRHKGYKREVFVDVAGEVDRRIAFGQLKRFAWRELQIATDDFNEKNVLGQGGFGKVYKGVLPDNTKIAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEPVLDWPTRKQVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRRTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKKLDEIVDRNLNNNYSMQEVEMMIQVALLCTQASPEERPAMSEVVRMLEGEGLAERWEEWQHVEVTRRQEYERLQRRLNWGDNSLHNQEAIELSGGR 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0202 608 FunFam Somatic embryogenesis receptor-like kinase 1 362 579 - -
Dere03g0202 608 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 570 - -
Dere03g0202 608 Pfam Protein kinase domain 285 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0202 608 ProSitePatterns Protein kinases ATP-binding region signature. 291 313 IPR017441 GO:0005524
Dere03g0202 608 Pfam Leucine rich repeat 113 172 IPR001611 GO:0005515
Dere03g0202 608 FunFam Putative LRR receptor-like serine/threonine-protein kinase 19 205 - -
Dere03g0202 608 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Dere03g0202 608 Gene3D Ribonuclease Inhibitor 21 204 IPR032675 -
Dere03g0202 608 Gene3D Phosphorylase Kinase; domain 1 254 361 - -
Dere03g0202 608 SMART serkin_6 285 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0202 608 Gene3D Transferase(Phosphotransferase) domain 1 362 579 - -
Dere03g0202 608 FunFam Somatic embryogenesis receptor kinase 1 254 361 - -
Dere03g0202 608 ProSiteProfiles Protein kinase domain profile. 285 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0202 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Dere03g0202 608 SUPERFAMILY L domain-like 23 193 - -
Dere03g0202 608 SUPERFAMILY Protein kinase-like (PK-like) 265 560 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0202 Dere-ChrDere03 5651166 5657852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0202 1 608 Receptor kinase-like Gene Family AT5G10290 76.480 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Dere03g0202 Pkinase 1.1e-42 CL0016