Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0198 ATGGAATCCGACGGCAGGAAACATTCTAACATAGAAGGCATTAGGGTTCTAGATACAGCGAATCAAACCTCTCCTAAATTTAAAAAAGAAAAAAGATTTTTGAAAAGAAAACTCGACCACCAACTTGTTTCATCCTCGAGGAAAGTCGAGCGCCAACAGAAGATATATTGGATGGCCATCACACCTTTTGGAAGTACATCTGTTGCACAATGGGGAGTTCGTCCTCAATTTTTCCTGAGATCCTCTATAACTGGCAGGATTGCATCATCTAGTTACAATATATCAAGCAGGGCTAGCTTCATGGCATCCCCAGGTTCAAGTTTTTTTGCTCAGGGTTCCTTGCGTACCTTATTTGACCTGGTTTCATCTCAAACATTGCATCCTCCCAAGGGATCAAGGTTGATAGTTAGAGCAGAGACAGATTACTATTCTGTCCTTGGAGTGTCGAGAAATGCCAGTAAATCTGAAATTAAGAGTGCTTATCGGAAACTTGCTCGGAATTATCATCCAGATGTGAACAAAGAAGCTGGGGCAGAAGAAAAATTTAAAGAAATTGGCAATGCATATGAGGTCTTATCAGATGATGAGAAGAGATCCATATATGACAGATATGGAGAGGCTGGGCTCAAAGGTTCTGGAATGGGCATGGGGGATTTCAGTAATCCTTTTGATCTGTTTGAGACGCTGTTTGAGGGCATGAATCGTGGCATGAACAACAGAGGCTCTTGGAATGGGGCTGTTGATGGTGAAGATGAGTATTACAGTCTTGTCTTGAACTTTAAGGAAGCAGTTTTTGGAGTAGAAAAAGAAATAGAGATAAGCCGGCTAGAGAGTTGTGGAACTTGCAATGGTACAGGGGCTAAACCAGGGACTACGCCATCCAGATGTAGTACCTGTGGAGGTCAAGGCCGGGTTGTCTCATCAACAAGGACACCCTTAGGTATTTTCCAGCAGTCAATGACATGCTCTTCATGTAATGGAACTGGAGAAATTTTGACACCTTGTAACACGTGTTCTGGGGATGGTCGAGTGAGGAGAACAAAGCGGATAAGTCTGAAAGTCCCAGCCGGTGTGGACTCTGGTAGCCGATTAAGGGTCCGAAATGAGGGGAATGCTGGAAGACGAGGTGGTTCTCCTGGTGACCTCTTTGTTGTCATTGAAGTCATTCCAGATCCTGTCCTTAAGCGTGATGACACCAACATCTTGTACACTTGTAAGGTGTCTTATATTGATGCAATCTTGGGAACTACAATTAATGTTCCTACTGTAGACGGCATGGTGGATTTAAAAATCCCTGCAGGGACCCAACCCAACACGACACTTGTTATGGCCAAGAAAGGTGTTCCCTTGCTCAATAAAAGCAATCTGAGGGGTGACCAGTTGGTTCGTGTGCAAGTTGAAATACCTAAAAGACTGAACAACGACGAGAGGAAGTTGATTGAGGAACTTGCTGATTTAAGCAAAGGCAAGACTGCGACCAGTAGGAGATGA 1491 0.4386 MESDGRKHSNIEGIRVLDTANQTSPKFKKEKRFLKRKLDHQLVSSSRKVERQQKIYWMAITPFGSTSVAQWGVRPQFFLRSSITGRIASSSYNISSRASFMASPGSSFFAQGSLRTLFDLVSSQTLHPPKGSRLIVRAETDYYSVLGVSRNASKSEIKSAYRKLARNYHPDVNKEAGAEEKFKEIGNAYEVLSDDEKRSIYDRYGEAGLKGSGMGMGDFSNPFDLFETLFEGMNRGMNNRGSWNGAVDGEDEYYSLVLNFKEAVFGVEKEIEISRLESCGTCNGTGAKPGTTPSRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGEILTPCNTCSGDGRVRRTKRISLKVPAGVDSGSRLRVRNEGNAGRRGGSPGDLFVVIEVIPDPVLKRDDTNILYTCKVSYIDAILGTTINVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPLLNKSNLRGDQLVRVQVEIPKRLNNDERKLIEELADLSKGKTATSRR 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0198 496 Gene3D - 249 384 - -
Dere03g0198 496 SMART dnaj_3 140 197 IPR001623 -
Dere03g0198 496 Pfam DnaJ domain 141 202 IPR001623 -
Dere03g0198 496 ProSiteProfiles dnaJ domain profile. 141 205 IPR001623 -
Dere03g0198 496 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 95 493 - -
Dere03g0198 496 Hamap Chaperone protein DnaJ [dnaJ]. 138 492 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Dere03g0198 496 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 266 345 IPR036410 -
Dere03g0198 496 ProSitePatterns Nt-dnaJ domain signature. 182 201 IPR018253 -
Dere03g0198 496 SUPERFAMILY HSP40/DnaJ peptide-binding domain 247 400 IPR008971 GO:0006457|GO:0051082
Dere03g0198 496 SUPERFAMILY HSP40/DnaJ peptide-binding domain 394 480 IPR008971 GO:0006457|GO:0051082
Dere03g0198 496 FunFam Chaperone protein dnaJ 1, mitochondrial 389 496 - -
Dere03g0198 496 Pfam DnaJ central domain 279 342 IPR001305 GO:0031072|GO:0051082
Dere03g0198 496 SUPERFAMILY Chaperone J-domain 137 234 IPR036869 -
Dere03g0198 496 FunFam Molecular chaperone DnaJ 271 347 - -
Dere03g0198 496 ProSiteProfiles Zinc finger CR-type profile. 266 347 IPR001305 GO:0031072|GO:0051082
Dere03g0198 496 FunFam Chaperone protein dnaJ A6 chloroplastic 138 242 - -
Dere03g0198 496 Gene3D DnaJ domain 138 242 IPR036869 -
Dere03g0198 496 Pfam DnaJ C terminal domain 254 469 IPR002939 -
Dere03g0198 496 PRINTS DnaJ domain signature 143 161 IPR001623 -
Dere03g0198 496 PRINTS DnaJ domain signature 161 176 IPR001623 -
Dere03g0198 496 PRINTS DnaJ domain signature 197 216 IPR001623 -
Dere03g0198 496 PRINTS DnaJ domain signature 177 197 IPR001623 -
Dere03g0198 496 CDD DnaJ_zf 279 342 IPR001305 GO:0031072|GO:0051082
Dere03g0198 496 Gene3D - 279 342 - -
Dere03g0198 496 CDD DnaJ_C 250 472 - -
Dere03g0198 496 CDD DnaJ 141 194 IPR001623 -
Dere03g0198 496 Gene3D - 389 496 - -
Dere03g0198 496 FunFam Putative Mitochondrial DnaJ chaperone 335 384 - -
Dere03g0198 496 NCBIfam molecular chaperone DnaJ 141 485 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0198 Dere-ChrDere03 5596752 5603966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0198 142 204 C2H2 Transcription Factor Family AT1G74250 46.377 9.40e-10 59.3