Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0192 ATGGTTCCGCAGTCGCAGGCTATGTGTGAAAATGCGTCGCCTGCGCATGTCTCGGCCCCTTCCACTTTGTGGAATAGGATCCGGAAGAGGATGGAGGAGGAAGAACACGAGGTCTACGGAGGCGAAATCCCAGACATGGGAGAAATGGAAGGAGACCTGGACTCTCACCATACGGATGTCGATATGTCTGCTGCCGACGATGATGCTGTCAAGGAGCTGGATGAGATGAAGAAGAGGTTGAAGGAAATGGAAGAGGAAGCAGCGGCTCTCCGTGAAATGCAGGCCAAGGTCGAGAAGGAGATGGGTGCAGTTCAAGATCCTGCTAATGCGGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTCGATCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTCCAATCATGCGGGACAGTGAATAGGGTGACTATTCTGACGGACAAGTTTGGCCAGCCAAAAGGTTTTGCTTATGTGGAATTCCTTGAACCTGAAGCTGTTCAGGAGGCTCTTGTCTTGAATGAATCTGAATTGCATGGCCGTCAATTGAAGGTTTTGCCAAAGAGGACCAATGTTCCTGGAATGAAACAGTATCGCCCTAGGCGTTTCAATCCTCACATGGCTTTTCGCTTCAGGAGGCCATACCCTCCTCCTTACTTTTACTCTCCTTATGGATATGGGAAGGTTCCCAGGTTCAGAAGGCCAACTCGGTTCATGCCATATTATTAG 756 0.4947 MVPQSQAMCENASPAHVSAPSTLWNRIRKRMEEEEHEVYGGEIPDMGEMEGDLDSHHTDVDMSAADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPANAAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEPEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPHMAFRFRRPYPPPYFYSPYGYGKVPRFRRPTRFMPYY 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0192 251 Gene3D - 59 195 IPR012677 -
Dere03g0192 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 199 IPR000504 GO:0003723
Dere03g0192 251 SUPERFAMILY RNA-binding domain, RBD 113 217 IPR035979 GO:0003676
Dere03g0192 251 Coils Coil 66 100 - -
Dere03g0192 251 CDD RRM_II_PABPs 124 195 - -
Dere03g0192 251 SMART rrm1_1 124 195 IPR000504 GO:0003723
Dere03g0192 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 193 IPR000504 GO:0003723
Dere03g0192 251 FunFam Polyadenylate-binding protein 1 62 195 - -
Dere03g0192 251 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 35 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0192 Dere-ChrDere03 5557795 5566919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0192 120 194 Eukaryotic Initiation Factors Gene Family AT2G36660 35.526 2.82e-10 58.2